Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01743 ATGAGTAATTGGTTGGGTTTCTCTCTCACTCCCCACCTCAAAATCCATGACGCCACCTCCGCCGACGACCAACACCCAAACCCCAGCAGCTTCCCGCCTCTCATGCCGCTCCGCTCCGACGGATCCCTCTGTATCGCCGCCGCACACGATTGGAGATCGTACGAGAATGAAATGGGTGCAAGGAATGAAGAGGAAAGTCCAAAGCTTGAGGATTTTTTGGGGAATTGTTATTCAAACTCACCGCCAAACGATCAGACTCATAATAACAACACCAACTTCATCCAGGCGAATACCAATAATAATTACCATTATCAGACGGATCATCACCCCTTAATTTCTAATAATGGTAATGCAATTTACAAGTCGTGGTTAGGTCCTACGACTTCGAGTCCCCAAAACGAGTGTGGCTTTCGATCTTTATCTCTTGGGATGAGCCCCAACTCGCATAACGACATCGTTTCATTGCCATCGCCGCCGCACATGGCGGTGGATTCCCGGAAACGACCGATGCCGGTAGGGAAGCCTCCGGTTAAAGAACCTGTTCCTAGGAAGTCCATTGATACTTTTGGACAAAGAACCTCCCAGTTTCGTGGTGTTACGAGACATAGATGGACAGGGAGATATGAAGCTCATTTGTGGGACAACAGCTGCAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGGTGGTTACGATAAGGAAGAAAAAGCAGCTCGAGCGTATGATTTAGCTGCACTTAAGTATTGGGGTCCAACCACACACATAAATTTTTCATTAAGCACTTACGAAAACGAGTTGGAAGAGATGAAGAACATGACCCGACAGGAGTTCGTAGCCAACTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGTGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGGAGGGTTGCAGGAAATAAGGATTTGTACCTTGGCACATTTAGTACACAAGAGGAGGCGGCGGAGGCCTATGACATAGCGGCCATCAAGTTCAGAGGGACGAGTGCGGTAACTAATTTCGACATTAGTAGATATGACGTGAAGAGGATTTGTTCTAGCTCGACTCTTATTGCGAGTGACCTTGCGAAACGTTCGCCGTTGAAAGATGGAATTCCATCGATGGCTGAGGAGTATAGTGCATGTGCTTCGCCAACGTCGTCGCAGCCTCTCTTGGCTATCACTGAGAATGGTGACGTTGAGAGTCACCATGAGTTGGTTGATATGGTTTGGTGCGACAATGGTGGTAAAGATGACGATACTCAACAAGAGGAGAATGTGGCAAAGATGAACGATGACTCGAGTTTGATGGGTTCGAGGAATGAGACAGAGGCATCGAAGTGTTGTATGGTGCAGAACAACGGAGAGTTTGGGGTCGGGGTCGGGGGAGGCGAGTATTCACAAGGGTATTACTCAATGGAGGAAGCAAAATATGAAGATGGGAGGGATGAAAATAGGGAGGTGGAGAATGATGCAACATTGGCTCATCATCAGGTTCCAATGTTTGCTCTATGGAATGAATGA 1554 47.43 MSNWLGFSLTPHLKIHDATSADDQHPNPSSFPPLMPLRSDGSLCIAAAHDWRSYENEMGARNEEESPKLEDFLGNCYSNSPPNDQTHNNNTNFIQANTNNNYHYQTDHHPLISNNGNAIYKSWLGPTTSSPQNECGFRSLSLGMSPNSHNDIVSLPSPPHMAVDSRKRPMPVGKPPVKEPVPRKSIDTFGQRTSQFRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFSLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGIPSMAEEYSACASPTSSQPLLAITENGDVESHHELVDMVWCDNGGKDDDTQQEENVAKMNDDSSLMGSRNETEASKCCMVQNNGEFGVGVGGGEYSQGYYSMEEAKYEDGRDENREVENDATLAHHQVPMFALWNE 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14248478 14251411 + Cp4.1LG02g17460.1 Cpe02g01743 465692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01743 517 ProSiteProfiles AP2/ERF domain profile. 195 258 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 MobiDBLite consensus disorder prediction 156 184 - -
Cpe02g01743 517 PRINTS Ethylene responsive element binding protein signature 334 354 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 PRINTS Ethylene responsive element binding protein signature 196 207 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 CDD AP2 194 257 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 Pfam AP2 domain 195 250 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 Pfam AP2 domain 295 344 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 Gene3D AP2/ERF domain 294 354 IPR036955 GO:0003700|GO:0006355
Cpe02g01743 517 Gene3D AP2/ERF domain 194 260 IPR036955 GO:0003700|GO:0006355
Cpe02g01743 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 58 453 - -
Cpe02g01743 517 SMART rav1_2 294 358 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 SMART rav1_2 195 264 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 ProSiteProfiles AP2/ERF domain profile. 294 352 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 58 453 - -
Cpe02g01743 517 SUPERFAMILY DNA-binding domain 293 354 IPR016177 GO:0003677
Cpe02g01743 517 Coils Coil 481 501 - -
Cpe02g01743 517 CDD AP2 293 354 IPR001471 GO:0003700|GO:0006355
Cpe02g01743 517 SUPERFAMILY DNA-binding domain 194 260 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01743 Cpe-Chr2:14248478 Cpe11g00106 Cpe-Chr11:586597 1.92E-120 dispersed
Cpe01g00784 Cpe-Chr1:4588880 Cpe02g01743 Cpe-Chr2:14248478 1.11E-07 transposed
Cpe01g00785 Cpe-Chr1:4591876 Cpe02g01743 Cpe-Chr2:14248478 4.51E-23 transposed
Cpe07g00831 Cpe-Chr7:7531542 Cpe02g01743 Cpe-Chr2:14248478 1.22E-88 transposed
Cpe11g00728 Cpe-Chr11:5567673 Cpe02g01743 Cpe-Chr2:14248478 3.89E-95 transposed
Cpe14g00643 Cpe-Chr14:4162762 Cpe02g01743 Cpe-Chr2:14248478 2.00E-85 transposed
Cpe16g00890 Cpe-Chr16:8370460 Cpe02g01743 Cpe-Chr2:14248478 4.99E-114 transposed
Cpe02g01743 Cpe-Chr2:14248478 Cpe07g00532 Cpe-Chr7:3517977 7.47E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49123 PF00847 AP2 1.80E-09 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01743 K09285 - csv:101205762 753.051