Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01745 ATGAATTCAGGTCCAAAGCCCTGCATCTCTCCTTTCACACCAACTCAATGGCAAGAACTAGAACACCAAGCTCTCATATTCAAATACATGGTTTCAGGAGTACCTATCCCCCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTCCCTCACCAACCCATTGGGTGGGGATGCTTTGAGATGGGTTTTGGCAGAAAAGCAGATCCTGAACCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACGCCACCAGCTCAAACGCCACCGCCTTTAATCCTCACTTCAACCCGGAGCCTCTCTGCTTCCTCCCCAACCTCCTCTTCCTATTCTCTCTCTACACTTTCCTCTTCTTCTTCTCTGACATGTGAAACTCAGTCCTATCACCAAACTCCTGCTCCTGCTGCTTATCAGGAATCCTCCATTCATCCATATTTGTATCCTCAATCATCATCCTCCAGACCTCCATGTTCTGATTTCTCTCCAAACAGTACAAACCCTCAACTCTTTTTGTACTCAGGGACTCATCCTCAAGCTGACAAAGACTACAGGGATATTAATGGTCCAAGAGAGGGTGTGGGCGTGCAGGCGTTCTTTCCCTCAGTTGCAGACTCTGCAAGAAGCATAGGTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATTCTCCCATGCTGTTTCCAACAGCCACCAAATTTACAGTTCGAAACAGGCGAGGCAACAACAAGAGCAACACTGCTTTGTTTTGGGCACAGATTTTAATAAATCAACAAGATCAGCTAAAACAGAGGAAGAAGATGATGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGATTCCTGGCTTGATTTAGCCACAAATTCAAATGGTTAA 1026 45.42 MNSGPKPCISPFTPTQWQELEHQALIFKYMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPAQTPPPLILTSTRSLSASSPTSSSYSLSTLSSSSSLTCETQSYHQTPAPAAYQESSIHPYLYPQSSSSRPPCSDFSPNSTNPQLFLYSGTHPQADKDYRDINGPREGVGVQAFFPSVADSARSIGEVYSQPIGMDSYKGFSHAVSNSHQIYSSKQARQQQEQHCFVLGTDFNKSTRSAKTEEEDDAETQKPLLHFFEDCPPKNSDSWLDLATNSNG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14257197 14259554 - Cp4.1LG02g17610.1 Cpe02g01745 465694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01745 341 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe02g01745 341 MobiDBLite consensus disorder prediction 185 206 - -
Cpe02g01745 341 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe02g01745 341 PANTHER GROWTH-REGULATING FACTOR 5 10 340 - -
Cpe02g01745 341 MobiDBLite consensus disorder prediction 132 151 - -
Cpe02g01745 341 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cpe02g01745 341 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cpe02g01745 341 MobiDBLite consensus disorder prediction 320 341 - -
Cpe02g01745 341 Pfam WRC 77 119 IPR014977 -
Cpe02g01745 341 PANTHER - 10 340 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cpe02g01745 341 MobiDBLite consensus disorder prediction 103 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01745 - - - cmos:111452139 652.129
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g01745 Cpe03g01046 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01745 Cpe-Chr2:14257197 Cpe16g00168 Cpe-Chr16:3771041 2.10E-56 dispersed
Cpe10g00498 Cpe-Chr10:2911162 Cpe02g01745 Cpe-Chr2:14257197 2.15E-36 dispersed
Cpe11g01195 Cpe-Chr11:9762295 Cpe02g01745 Cpe-Chr2:14257197 2.83E-62 wgd
Cpe18g00326 Cpe-Chr18:4738529 Cpe02g01745 Cpe-Chr2:14257197 1.25E-68 wgd
Cpe02g01745 Cpe-Chr2:14257197 Cpe03g01046 Cpe-Chr3:8513101 1.03E-175 wgd
Cpe02g01745 Cpe-Chr2:14257197 Cpe04g01028 Cpe-Chr4:9123274 4.65E-71 wgd
Cpe02g01745 Cpe-Chr2:14257197 Cpe07g01065 Cpe-Chr7:9480069 5.08E-24 wgd
Cpe02g01745 Cpe-Chr2:14257197 Cpe07g00530 Cpe-Chr7:3504740 3.67E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g99 Blo05g00042 . Bda04g00930 . . . . . . . Cma01g00034 Cma14g01236 Car01g00027 Car14g01092 . . . Bhi01g02800 Tan04g2799 Cmetu04g2587 Lac12g2484 Hepe02g1533 . . Cla07g01338 Cam07g1156 Cec07g1527 Cco07g1484 Clacu07g1409 Cmu07g1384 Cre07g1767 . . . . . . Chy04g00698 . . . . . . . Bma09g00981 . . Cmo01g00038 Cmo14g01265 . . . . Cpe02g01745 Cpe03g01046 . . . . . . . . . . . . . . Lsi07g00619 . . Cme04g01295
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01033 CCT 1 413 GRF Transcription Factor Family AT3G52910 50.4 2.2e-67 253.4
Cpe02g01745 CST 11 110 GRF Transcription Factor Family AT3G13960 82.0 6.7e-51 198.7
Cpe11g01195 . 1523 1627 GRF Transcription Factor Family AT3G13960 73.3 6.7e-43 172.2
Cpe18g00326 CST 8 110 GRF Transcription Factor Family AT3G13960 71.8 5.7e-42 169.1
Cpe04g01028 CST 8 110 GRF Transcription Factor Family AT3G13960 72.8 7.4e-42 168.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49124 PF08879 WRC 1.80E-21 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01745 Cpe_Chr02 FPKM 0.0 0.0 5.114384 4.770326 0.0 0.405473 0.0 0.050594 0.0 0.114263