Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01754 GGCCTAGGGTACGCTTTTCGGGCTTCAGTCTTCTATCGCTGCCCAACAATTTTCCCCTTTCGCATGAATTTAGGGGCTACGGACTGTGTCTTGTCGTCGATTTTTCTTGATCTCATCCCGCTGGATTTTCAAATTTCCTTGATTATTCCCATTGGGTCGGTGGGTTCTTCCATTTCTGTCGTCGGAGGCGGTGAATTTCATTTTGCTTCTTCCGGTGGAGGGTGTTGGTGCTCTGCTTTGGTGAATGTTTGTGTTCTAACGGTTCCTCGAGGAAGTGGAAAGGTCTCATTGCTCAAGGAACTTCGCTTAATGCAATTTTCTCCCGATTATTCCTCTGCGAGACAAACTTGTAGCTTACTTGCTGTTACCTGTGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATCTGAAATACCCCTTTCCAGAATTGGCTTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCAAGAATGAGTTCGGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTATGTGGACTATTCGATACTGCATTACCAACCACCGTGTACTTAGAACTCCCAAATGGAGGCATAATAGCGGAGACTCTTCATTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCTGCTCATTTCCGCAATGCATTACTTTCCGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACGATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTAACGTAGAACCGCCTGAGCTAGATGCTGGTGAAGATGAAGATGCTTCTTTAGAAGCCCTCCCTGTTATAAGTGTACATGATAATAATGTGACCATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGCGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCCGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTACTGCCACACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGTCAAGGAATGAGGAATACTCTCTCTCATGACAGTCTCGCATATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCCCCAATGAATGGGTTTAAGGCACCCTTACTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAGTGGAGGCCAGCCCAAGGCTAGTTTGCCCGCCGTTACCCCGTCCAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGACGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGTTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCGCAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTGTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCACGGGATGAAGAGACTGTAGGTGAAATAGTTGGGAAGTCGAGGCATCATCAAGCAATGGCCCTTCCCTTCCTGCTCCACCATTTATACTTCTCACTCCGGCCTTCCCAATCACCGATGAGAGTTGGAGCAATGGCAAATGCACAACCAGCAAAGCCCGAACTGTGCAAGGAAGGAGGAGACAGAGACGAGATGCTGATGAAGGAGCTGGCTGATACATGGAAATGGAAGAGATGTCCGCATTGCAAAATTTATGTTGAGAAGATCGGAGGCTGCGTCCATTTTACTTGCAGGTGCGGATCAGCATTTTGCTACGGCTGTGGATCTAAGTGGGTTGATGGCCATACTCGTGGAATGGCAGATAAATCATGTATCAAGCGGCTTCAGAAAGAATATAGGGCTCTTTGTAAAGAGCCTGTTTCACACATTGTTGCTCGTCCCTCTCCCAGTGATATTCTTGAGTGGCATTATGTTTTGGAGGGAAGTGAGGGGACTCCTTTTGCAGGTGGGTACTACCATGGAAAGATTAAATTTCCTCCGGAGTATCCATACAAACCTCCGGGAATCAGCATGATCACCCCAAATGGTCGGTTCATGACTCAGAAGAAAATTTGCTTATCTATGAGCGACTTTCACCCAGAAAGTTGGAATCCTATGTGGTCTGTCTCTAGCATCCTAACCGGGCTTCTTTCATTCATGATGGACAACAGTCCTACTACTGGCAGCGTGAATACTACTGCTGCTGAGAAGGAACGCTTGGCTAAGGCTTCTCTTGCATTCAATTGTAAAAACCCAACATTTAGAAAACTGTTTCCCGAGTACGTGGAGAATTTCAATCAGCGGCAGCAATCGGAGCAGCTTGTTGCAGAGGTATCACCAAAGCCATCAGTGGAAGGCGAAGCTAGGAAACTAATTGAGAAGGTGAAGTCCATGGAAGGGAACATAAACAAAGCAGCAGATGGAGACCACATGAAAAGAAATCGGAAGCAGTCGTTCCCTACATGGTTGATGTTGCTGCTGTTCTCGATCTTCGGTGTCCTAATGGCATTGCCTCTCCTTCAACCATGA 3714 45.07 GLGYAFRASVFYRCPTIFPFRMNLGATDCVLSSIFLDLIPLDFQISLIIPIGSVGSSISVVGGGEFHFASSGGGCWCSALVNVCVLTVPRGSGKVSLLKELRLMQFSPDYSSARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELASSGRLEVQVLTNPSKNEFGRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLCGLFDTALPTTVYLELPNGGIIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGRNYALPGNADDFRSDLEPQLIGEPPKINVEPPELDAGEDEDASLEALPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPHWFKPPTPSRKRVEPSQGMRNTLSHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMRPIPLVHRNKMKLFSGWTEGDGNSGGQPKASLPAVTPSKHVTVGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHSVANGSPQGITNPRDEETVGEIVGKSRHHQAMALPFLLHHLYFSLRPSQSPMRVGAMANAQPAKPELCKEGGDRDEMLMKELADTWKWKRCPHCKIYVEKIGGCVHFTCRCGSAFCYGCGSKWVDGHTRGMADKSCIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFAGGYYHGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKERLAKASLAFNCKNPTFRKLFPEYVENFNQRQQSEQLVAEVSPKPSVEGEARKLIEKVKSMEGNINKAADGDHMKRNRKQSFPTWLMLLLFSIFGVLMALPLLQP 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14307058 14318220 - Cp4.1LG02g17680.1 Cpe02g01754 465703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01754 1237 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 112 875 IPR042293 -
Cpe02g01754 1237 Gene3D - 694 810 IPR036431 GO:0003677
Cpe02g01754 1237 Pfam IBR domain, a half RING-finger domain 949 997 IPR002867 -
Cpe02g01754 1237 SMART ubc_7 1008 1162 - -
Cpe02g01754 1237 SUPERFAMILY ARID-like 700 813 IPR036431 GO:0003677
Cpe02g01754 1237 CDD PHD_ARID4_like 810 860 - -
Cpe02g01754 1237 Pfam Ubiquitin-conjugating enzyme 1009 1131 IPR000608 -
Cpe02g01754 1237 SMART ARID_2 697 800 - -
Cpe02g01754 1237 Gene3D Ubiquitin Conjugating Enzyme 996 1175 IPR016135 -
Cpe02g01754 1237 MobiDBLite consensus disorder prediction 654 678 - -
Cpe02g01754 1237 ProSiteProfiles ARID domain profile. 700 804 IPR001606 GO:0003677
Cpe02g01754 1237 SUPERFAMILY FYVE/PHD zinc finger 800 867 IPR011011 -
Cpe02g01754 1237 MobiDBLite consensus disorder prediction 633 678 - -
Cpe02g01754 1237 SUPERFAMILY UBC-like 1006 1160 IPR016135 -
Cpe02g01754 1237 CDD ARID 702 800 - -
Cpe02g01754 1237 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1005 1162 IPR000608 -
Cpe02g01754 1237 CDD UBCc 1007 1157 IPR000608 -
Cpe02g01754 1237 SUPERFAMILY RING/U-box 946 998 - -
Cpe02g01754 1237 Pfam ARID/BRIGHT DNA binding domain 703 800 IPR001606 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01754 Cpe-Chr2:14307058 Cpe03g01028 Cpe-Chr3:8409324 0 dispersed
Cpe20g00755 Cpe-Chr20:6706478 Cpe02g01754 Cpe-Chr2:14307058 2.09E-09 dispersed
Cpe12g00555 Cpe-Chr12:5659218 Cpe02g01754 Cpe-Chr2:14307058 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49125 PF00179 UQ_con 7.50E-19 CL0208 Cpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01754 - - csv:101215769 1375.53