Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01754 GGCCTAGGGTACGCTTTTCGGGCTTCAGTCTTCTATCGCTGCCCAACAATTTTCCCCTTTCGCATGAATTTAGGGGCTACGGACTGTGTCTTGTCGTCGATTTTTCTTGATCTCATCCCGCTGGATTTTCAAATTTCCTTGATTATTCCCATTGGGTCGGTGGGTTCTTCCATTTCTGTCGTCGGAGGCGGTGAATTTCATTTTGCTTCTTCCGGTGGAGGGTGTTGGTGCTCTGCTTTGGTGAATGTTTGTGTTCTAACGGTTCCTCGAGGAAGTGGAAAGGTCTCATTGCTCAAGGAACTTCGCTTAATGCAATTTTCTCCCGATTATTCCTCTGCGAGACAAACTTGTAGCTTACTTGCTGTTACCTGTGGAAGATTGCCTAAAGTAAAATGCGAGGAGGATGTTGCCGAGCATAATCTGAAATACCCCTTTCCAGAATTGGCTTCTTCCGGACGATTGGAGGTCCAAGTTCTAACAAATCCAAGCAAGAATGAGTTCGGTAGAATTGTCGAATCATGTCAACCGAGCTTTGTCTACTTGCAAGGGGAGCAACTTGAGAATGACGAACTTGGGTCGTTGGTTTGGAATGGTGTTGATTTATCTCTTGAAGATTTATGTGGACTATTCGATACTGCATTACCAACCACCGTGTACTTAGAACTCCCAAATGGAGGCATAATAGCGGAGACTCTTCATTCTAAGGGAATTCCTTATGTCATATATTGGAACAACACATTTTCATGTTATGCTGCTGCTCATTTCCGCAATGCATTACTTTCCGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAGAAATTATGCTCTTCCTGGGAATGCTGACGATTTTAGGAGTGATCTAGAGCCTCAACTTATTGGAGAACCTCCAAAGATTAACGTAGAACCGCCTGAGCTAGATGCTGGTGAAGATGAAGATGCTTCTTTAGAAGCCCTCCCTGTTATAAGTGTACATGATAATAATGTGACCATGAGACTTCTCATCTGTGGATTGCCTTGCACACCGGATGCGTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCCCTTTTGAATATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGCGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCGGCCCACATCTCAGTATTGGTGTCTGGTAGTGCTCATACTTGTTTTGATGATCAGCTGCTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTGGTTCATGTCATGCATGATTGTGAGGGCAACAAACATCACATGCACAAGCCTCGAAAATCTGCTTCAGTTGCTTGTGGGGCAACAGTTTTTGAGGTTTCGATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCACATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGTTCAGGGTTTTCCTGTTGCTTCCTTTGAGAAAGAGGATGCCGAGCGGTTGCTCTTCTTTTGTTCAAGGGACGAGAATGATAAACATTCAGATCAGTTGCTTGTAAGTGTACTGCCACACTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGTCAAGGAATGAGGAATACTCTCTCTCATGACAGTCTCGCATATGCAAATATCCCTTCAGTTAGAAGAGTAGGTAGAGAGGAGCCTGCCCCAATGAATGGGTTTAAGGCACCCTTACTCCCGGCTAGGAAAAGATTAAAAGTAGCCACCATGAGGCCTATTCCACTTGTGCATAGGAATAAAATGAAACTTTTCTCTGGATGGACTGAAGGAGATGGTAATAGTGGAGGCCAGCCCAAGGCTAGTTTGCCCGCCGTTACCCCGTCCAAGCATGTAACTGTAGGATCAACTTCTGCAACACAAAGAAAATCATTTTCAAGCTCATCTCAGTCTAAGCAGCAAATTATTCCCTTAAATCCACTACCTTTAAAGAAACATGGCTGTGGAAGAAATCCAGTTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGACGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATTCCTCAAGGTGGAGTTGAGGAGTTCCCAGATGCCGTACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGTTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACATTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGTTGCCTTTTGTGTCGCAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTTGGGTGCGACCGGAGGCAGGGTCTTGGTGCATTTAAGGATTATGCCAAAACAGATGGGTTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACATAGTGTAGCAAACGGGTCTCCGCAAGGAATAACAAATCCACGGGATGAAGAGACTGTAGGTGAAATAGTTGGGAAGTCGAGGCATCATCAAGCAATGGCCCTTCCCTTCCTGCTCCACCATTTATACTTCTCACTCCGGCCTTCCCAATCACCGATGAGAGTTGGAGCAATGGCAAATGCACAACCAGCAAAGCCCGAACTGTGCAAGGAAGGAGGAGACAGAGACGAGATGCTGATGAAGGAGCTGGCTGATACATGGAAATGGAAGAGATGTCCGCATTGCAAAATTTATGTTGAGAAGATCGGAGGCTGCGTCCATTTTACTTGCAGGTGCGGATCAGCATTTTGCTACGGCTGTGGATCTAAGTGGGTTGATGGCCATACTCGTGGAATGGCAGATAAATCATGTATCAAGCGGCTTCAGAAAGAATATAGGGCTCTTTGTAAAGAGCCTGTTTCACACATTGTTGCTCGTCCCTCTCCCAGTGATATTCTTGAGTGGCATTATGTTTTGGAGGGAAGTGAGGGGACTCCTTTTGCAGGTGGGTACTACCATGGAAAGATTAAATTTCCTCCGGAGTATCCATACAAACCTCCGGGAATCAGCATGATCACCCCAAATGGTCGGTTCATGACTCAGAAGAAAATTTGCTTATCTATGAGCGACTTTCACCCAGAAAGTTGGAATCCTATGTGGTCTGTCTCTAGCATCCTAACCGGGCTTCTTTCATTCATGATGGACAACAGTCCTACTACTGGCAGCGTGAATACTACTGCTGCTGAGAAGGAACGCTTGGCTAAGGCTTCTCTTGCATTCAATTGTAAAAACCCAACATTTAGAAAACTGTTTCCCGAGTACGTGGAGAATTTCAATCAGCGGCAGCAATCGGAGCAGCTTGTTGCAGAGGTATCACCAAAGCCATCAGTGGAAGGCGAAGCTAGGAAACTAATTGAGAAGGTGAAGTCCATGGAAGGGAACATAAACAAAGCAGCAGATGGAGACCACATGAAAAGAAATCGGAAGCAGTCGTTCCCTACATGGTTGATGTTGCTGCTGTTCTCGATCTTCGGTGTCCTAATGGCATTGCCTCTCCTTCAACCATGA 3714 45.07 GLGYAFRASVFYRCPTIFPFRMNLGATDCVLSSIFLDLIPLDFQISLIIPIGSVGSSISVVGGGEFHFASSGGGCWCSALVNVCVLTVPRGSGKVSLLKELRLMQFSPDYSSARQTCSLLAVTCGRLPKVKCEEDVAEHNLKYPFPELASSGRLEVQVLTNPSKNEFGRIVESCQPSFVYLQGEQLENDELGSLVWNGVDLSLEDLCGLFDTALPTTVYLELPNGGIIAETLHSKGIPYVIYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGRNYALPGNADDFRSDLEPQLIGEPPKINVEPPELDAGEDEDASLEALPVISVHDNNVTMRLLICGLPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHVMHDCEGNKHHMHKPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSHRSLVALGIGGVQGFPVASFEKEDAERLLFFCSRDENDKHSDQLLVSVLPHWFKPPTPSRKRVEPSQGMRNTLSHDSLAYANIPSVRRVGREEPAPMNGFKAPLLPARKRLKVATMRPIPLVHRNKMKLFSGWTEGDGNSGGQPKASLPAVTPSKHVTVGSTSATQRKSFSSSSQSKQQIIPLNPLPLKKHGCGRNPVQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPDAVLNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHSVANGSPQGITNPRDEETVGEIVGKSRHHQAMALPFLLHHLYFSLRPSQSPMRVGAMANAQPAKPELCKEGGDRDEMLMKELADTWKWKRCPHCKIYVEKIGGCVHFTCRCGSAFCYGCGSKWVDGHTRGMADKSCIKRLQKEYRALCKEPVSHIVARPSPSDILEWHYVLEGSEGTPFAGGYYHGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTAAEKERLAKASLAFNCKNPTFRKLFPEYVENFNQRQQSEQLVAEVSPKPSVEGEARKLIEKVKSMEGNINKAADGDHMKRNRKQSFPTWLMLLLFSIFGVLMALPLLQP 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14307058 14318220 - Cp4.1LG02g17680.1 Cpe02g01754 465703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01754 1237 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 112 875 IPR042293 -
Cpe02g01754 1237 Gene3D - 694 810 IPR036431 GO:0003677
Cpe02g01754 1237 Pfam IBR domain, a half RING-finger domain 949 997 IPR002867 -
Cpe02g01754 1237 SMART ubc_7 1008 1162 - -
Cpe02g01754 1237 SUPERFAMILY ARID-like 700 813 IPR036431 GO:0003677
Cpe02g01754 1237 CDD PHD_ARID4_like 810 860 - -
Cpe02g01754 1237 Pfam Ubiquitin-conjugating enzyme 1009 1131 IPR000608 -
Cpe02g01754 1237 SMART ARID_2 697 800 - -
Cpe02g01754 1237 Gene3D Ubiquitin Conjugating Enzyme 996 1175 IPR016135 -
Cpe02g01754 1237 MobiDBLite consensus disorder prediction 654 678 - -
Cpe02g01754 1237 ProSiteProfiles ARID domain profile. 700 804 IPR001606 GO:0003677
Cpe02g01754 1237 SUPERFAMILY FYVE/PHD zinc finger 800 867 IPR011011 -
Cpe02g01754 1237 MobiDBLite consensus disorder prediction 633 678 - -
Cpe02g01754 1237 SUPERFAMILY UBC-like 1006 1160 IPR016135 -
Cpe02g01754 1237 CDD ARID 702 800 - -
Cpe02g01754 1237 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1005 1162 IPR000608 -
Cpe02g01754 1237 CDD UBCc 1007 1157 IPR000608 -
Cpe02g01754 1237 SUPERFAMILY RING/U-box 946 998 - -
Cpe02g01754 1237 Pfam ARID/BRIGHT DNA binding domain 703 800 IPR001606 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01754 - - - csv:101215769 1375.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01754 Cpe-Chr2:14307058 Cpe03g01028 Cpe-Chr3:8409324 0 dispersed
Cpe20g00755 Cpe-Chr20:6706478 Cpe02g01754 Cpe-Chr2:14307058 2.09E-09 dispersed
Cpe12g00555 Cpe-Chr12:5659218 Cpe02g01754 Cpe-Chr2:14307058 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g14 . . Bda04g00952 Bda10g00894 . Bpe10g00719 . . . . Cma01g00017 . Car01g00014 Car14g01076 Sed06g2285 . . Bhi01g02824 Tan04g2835 Cmetu04g1595 Lac12g2507 . . . . . . . . . . . . . . . . . . . . . . . . Bma09g00999 Bma15g00303 . Cmo01g00021 . . . . . Cpe02g01754 . . . . . . . . . . . . . . . . Csa03g02799 . Cme04g01404
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe17g00251 . 45 384 ARID Transcription Factor Family AT1G04880 60.3 4.8e-106 382.1
Cpe12g00084 . 1 373 ARID Transcription Factor Family AT1G04880 54.2 6.5e-103 371.7
Cpe02g00012 . 143 422 ARID Transcription Factor Family AT1G20910 67.5 2.0e-103 373.2
Cpe08g01275 . 207 478 ARID Transcription Factor Family AT1G20910 59.7 8.8e-88 321.2
Cpe14g01071 . 163 433 ARID Transcription Factor Family AT1G20910 50.9 7.0e-69 258.5
Cpe02g00052 CCT 16 312 ARID Transcription Factor Family AT1G76110 65.3 1.9e-110 396.4
Cpe06g00043 CCT 16 284 ARID Transcription Factor Family AT1G76110 59.4 1.4e-94 343.6
Cpe02g00012 . 52 452 ARID Transcription Factor Family AT1G76510 60.4 2.2e-127 453.0
Cpe08g01275 . 198 508 ARID Transcription Factor Family AT1G76510 61.7 2.5e-107 386.3
Cpe14g01071 . 154 463 ARID Transcription Factor Family AT1G76510 53.2 1.4e-86 317.4
Cpe02g01754 . 113 875 ARID Transcription Factor Family AT3G43240 59.8 3.7e-260 894.8
Cpe03g01028 . 1 781 ARID Transcription Factor Family AT3G43240 58.3 4.1e-259 891.3
Cpe12g00555 . 2 771 ARID Transcription Factor Family AT3G43240 57.1 7.9e-255 877.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0027933 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49125 PF00179 UQ_con 7.50E-19 CL0208 Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01754 Cpe_Chr02 FPKM 8.303151 9.534876 8.863934 7.617314 7.451272 6.803288 7.790798 15.278393 13.982436 14.711547