Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g01761 ATGGAGCCCTACCATGAAGTTTCAGAAATGCCAGAGCAGATTATACTACGCTGGGACTCTGCTGCGCCGGATGAACTGAAGGATAACATGATTTTTGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGATGAAATCCAGAGGTCGATGTCGTCGGCTTCGATATTGGACGATCAGAACAAAGTCGATTCCACTATGCAGATTGCCATGGCCAGGCTTGAGGATGAGTTCCGTCACATTCTGTCCACTCATACCATTCCGATCGAGGTCGAGTCGCTTACTGATCCGTCTCCATCTGCTTGCTCCATGTCCAGTTGTACGAGTGCTGTCTTCGAGGACGTGAACGACGACGAAGCGGATTCGCAGGAAGTTCACCTCGATTTAAGTGGTAGTCCAAGTTTTGGGTCAAGTGGACGATCGAGCTATCGGAGGACGAGCAGTATTCGTGAAATTGATCTGATACCTTCCGTGGCGATTATCGATCTACGGAGTATTGCTGAGAGGATGATAGCGGCAGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGAAAGTCCACCTTCGACTCCAGCTTCAAACGCCTCGGAATTGAGAAACTGAGCATTGGAGATATCCAGAGGTTGGATTGGAACGAGCTGGTGACGAAGATCAGAAGGTGGATCAGAGCGGCAAAGATTTCCGTTAGGACTCTGTTTTCCAGCGAGAAGAGGCTCTGCCAGCAAATCTTCTATGGCATAGGGACCGCCATAGAGGATGCTTGTTTCATGGAGACTGTTAAAGGTCCTGTGACTCAATTGTTCAATTTCGCCGAAGCGATCAGTATTAGCCGTAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGATGCCTTAACAGATTTGATACCTGACATTGATGTTATATTCGAATCAAAATCGGCGGAATATATTCGGATACAGGCGGCGGAGATATTGTCGCGGCTGGGGGAGGCCGTCAGAGGAACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGCTGCATCCGGTGCTGGGCGGGACGGTTCATCCGTTGACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGAATACCAAGTGGCCTTAGAGGAGCTCATCGTGTCCAAACCGTCGACGGGCTCGAGGAACTCGGCAGATATGGATGAGTTTTCGGAGGTAGAGGGGAAAACCCCGCTAGCGCTCCATCTGATATGGAGCATCGTGATTCTGCAGTTGAATTTGGAGGGAAAATCCAGGCAGTACAAAGACCCTTCTCTAGCTCATTTCTTTATCATGAACAACGTTCATTACATTGTTGAGAAGATAAGAGGATCCCCGGAATTGCGAGACATGATTGGAGAGGTTTATCTGAAAAGGATGACCGGGAAGTATCGACAGGCGGCGACAAACTACGAGCGAACAACGTGGGTGAATGTGGTGTACTGCCTGCGGAACGAAGGGTTGAATGCGGGGGGAAGCTTGTCTTCAGCCCCCTCAAAGAGCGCTATTAGAGAGAGAATGAAGAGTTTCAACGCCATGTTTGAGGAGGTTCACAGGACGCAGTCGGCATGGTTGATCCCAGATCCTCTGCTGAAGGAGGAGCTTCGCATATCCATAACCGAGAAGTTGATCCCGGCTTACAGGTCGTTTCTTGGCCTCCATGGTCACCACATAGAGAGTGGAAGGCACCCAGAAAATTACATCAAGTACTCGGTTGAGGAACTGGAAAATGGCATCCTGGATTTCTTTGAGGGTTGCTCGGCTGTCAAGGCTGCTGGAATTACTTCTATTGGCGTTCGCGGTAAAGATTCAGTTTGTGTTGTGACCCAAAACAAGGTTCCGGACAAGCTTCTGGATCAATCAAGTGTCTCACATCTTTTCCCTATCACAAAGTACCTAGGGTTGTTAGCAACAGGCGTGACAGCTGATGCCAGAACATTGGTTCAGCAAGCAAGGAATGAAGCAGCCGAGATTCGTTTTAGATATGGATATGAGATGCCGGTGGATGTATTAGCTAAATGGTGTTCGGAAATCTCTGCGACCACTATCACAGAACCAATAGCGGCGATAGCAGCGCCAGTCCCGGAAAATCCTGCGGCGGCAATGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGTGAGTGTTGTGGGCTGTCGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGCCGATTCGACGGAAAATGGATTTGCGGCCTGTGTTCGGAGGCAGTTCAAGACGAGATTCTCAAGTCCGACGTCGTACTAATCACCACCGAGGAAGCCATGGCCAAGCACATGAGCTTCTGCAAGAAATTCGCCGCCACCGCAGGGCCACCTCCGGACCCGACGCCCCATCTCATAACGGCAATGAGACAGATCCTCCGCCGCAGTTTAGACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCGGCGCAGACAAAATACGCGGCCGGGTTCTTGGTTGA 2517 50.66 MEPYHEVSEMPEQIILRWDSAAPDELKDNMIFDSDREEIDRYLRAVDEIQRSMSSASILDDQNKVDSTMQIAMARLEDEFRHILSTHTIPIEVESLTDPSPSACSMSSCTSAVFEDVNDDEADSQEVHLDLSGSPSFGSSGRSSYRRTSSIREIDLIPSVAIIDLRSIAERMIAAGYLRECIQVYGSVRKSTFDSSFKRLGIEKLSIGDIQRLDWNELVTKIRRWIRAAKISVRTLFSSEKRLCQQIFYGIGTAIEDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSAEYIRIQAAEILSRLGEAVRGTLSEFENAVLREPSLHPVLGGTVHPLTRYVMNYVSLISEYQVALEELIVSKPSTGSRNSADMDEFSEVEGKTPLALHLIWSIVILQLNLEGKSRQYKDPSLAHFFIMNNVHYIVEKIRGSPELRDMIGEVYLKRMTGKYRQAATNYERTTWVNVVYCLRNEGLNAGGSLSSAPSKSAIRERMKSFNAMFEEVHRTQSAWLIPDPLLKEELRISITEKLIPAYRSFLGLHGHHIESGRHPENYIKYSVEELENGILDFFEGCSAVKAAGITSIGVRGKDSVCVVTQNKVPDKLLDQSSVSHLFPITKYLGLLATGVTADARTLVQQARNEAAEIRFRYGYEMPVDVLAKWCSEISATTITEPIAAIAAPVPENPAAAMLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSLDSPRALRSKRTSRTSGADKIRGRVLG 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14340568 14346580 + Cp4.1LG02g17490.1 Cpe02g01761 465710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g01761 838 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 596 688 IPR029055 -
Cpe02g01761 838 MobiDBLite consensus disorder prediction 814 829 - -
Cpe02g01761 838 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 597 694 IPR029055 -
Cpe02g01761 838 PANTHER EXOCYST COMPLEX PROTEIN EXO70 8 598 IPR004140 GO:0000145|GO:0006887
Cpe02g01761 838 Pfam Exo70 exocyst complex subunit 224 589 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cpe02g01761 838 MobiDBLite consensus disorder prediction 814 838 - -
Cpe02g01761 838 Pfam Protein of unknown function (DUF1677) 722 810 IPR012876 -
Cpe02g01761 838 Gene3D Exocyst complex component Exo70 15 596 - -
Cpe02g01761 838 Pfam Proteasome subunit 602 691 IPR001353 GO:0005839|GO:0051603
Cpe02g01761 838 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 8 598 - -
Cpe02g01761 838 SUPERFAMILY Cullin repeat-like 9 593 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g01761 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101204229 986.097
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe02g01761 Cpe12g00578 CCT
Cpe02g01761 Cpe17g00452 CCT
Cpe02g01761 Cpe17g00452 ECH
Cpe02g01761 Cpe12g00578 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01761 Cpe-Chr2:14340568 Cpe09g00962 Cpe-Chr9:8594080 1.27E-149 dispersed
Cpe03g00140 Cpe-Chr3:707814 Cpe02g01761 Cpe-Chr2:14340568 3.31E-97 dispersed
Cpe03g01442 Cpe-Chr3:11540885 Cpe02g01761 Cpe-Chr2:14340568 3.11E-27 dispersed
Cpe06g00490 Cpe-Chr6:2903022 Cpe02g01761 Cpe-Chr2:14340568 7.88E-19 dispersed
Cpe08g00267 Cpe-Chr8:1726054 Cpe02g01761 Cpe-Chr2:14340568 2.56E-27 dispersed
Cpe12g00578 Cpe-Chr12:5861897 Cpe02g01761 Cpe-Chr2:14340568 5.67E-41 dispersed
Cpe17g00151 Cpe-Chr17:969733 Cpe02g01761 Cpe-Chr2:14340568 4.87E-23 dispersed
Cpe17g00451 Cpe-Chr17:3363270 Cpe02g01761 Cpe-Chr2:14340568 5.29E-48 dispersed
Cpe17g00452 Cpe-Chr17:3369976 Cpe02g01761 Cpe-Chr2:14340568 7.29E-43 dispersed
Cpe17g00536 Cpe-Chr17:4476150 Cpe02g01761 Cpe-Chr2:14340568 1.45E-16 dispersed
Cpe03g01013 Cpe-Chr3:8277352 Cpe02g01761 Cpe-Chr2:14340568 0 transposed
Cpe12g00577 Cpe-Chr12:5854802 Cpe02g01761 Cpe-Chr2:14340568 3.32E-43 wgd
Cpe18g00311 Cpe-Chr18:4669662 Cpe02g01761 Cpe-Chr2:14340568 5.26E-32 wgd
Cpe02g01761 Cpe-Chr2:14340568 Cpe03g01010 Cpe-Chr3:8264222 3.74E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g76 Blo05g00036 . Bda04g00937 . Bpe06g00805 . Bma10g00722 Bma13g01208 Cmo08g00776 . . . . . . Cpe12g00578 Cpe17g00452 . . . . . . . Cla07g01381 Cam07g1108 Cec07g1572 Cco07g1531 Clacu07g1461 Cmu07g1434 Cre07g1814 Cone20ag1341 Cone17ag0063 . . Lsi02g02890 Csa07g02346 . Cme01g02801 . Blo10g00972 Bda05g00608 Bda12g01053 Bpe03g00676 . Bma09g00987 . Sed09g1650 Cmo01g00010 . Cma08g00805 . Car08g00686 Car17g00643 Cpe02g01761 . Bhi09g00310 Tan06g0121 Cmetu01g0831 . . . . Cla09g00098 Cam09g0106 Cec09g0107 Cco09g0106 Clacu09g0113 . Cre09g0099 . Csa03g02766 Chy01g02161 Cme04g01354
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g01290 CCT 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Cpe09g00367 CCT 10 641 EXO70 exocyst subunit family AT5G03540 74.9 5.0e-277 950.7
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G03540 67.1 4.9e-248 854.4
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G03540 65.8 2.2e-240 828.9
Cpe10g00315 CCT 1 639 EXO70 exocyst subunit family AT5G52340 74.7 2.1e-277 951.8
Cpe01g01290 CCT 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.6e-269 925.6
Cpe19g00500 CCT 1 620 EXO70 exocyst subunit family AT5G52340 72.8 2.1e-269 925.2
Cpe09g00367 CCT 12 641 EXO70 exocyst subunit family AT5G52340 72.1 2.2e-261 898.7
Cpe01g01290 CCT 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.1e-166 582.0
Cpe10g00315 CCT 145 632 EXO70 exocyst subunit family AT5G52350 60.3 5.1e-164 575.1
Cpe09g00367 CCT 147 641 EXO70 exocyst subunit family AT5G52350 57.3 9.2e-158 554.3
Cpe19g00500 CCT 145 613 EXO70 exocyst subunit family AT5G52350 58.0 8.7e-156 547.7
Cpe20g00898 CCT 1 625 EXO70 exocyst subunit family AT5G58430 65.7 4.9e-242 834.3
Cpe02g01140 CCT 1 624 EXO70 exocyst subunit family AT5G58430 65.6 5.5e-241 830.9
Cpe20g00898 CCT 1 624 EXO70 exocyst subunit family AT1G07000 52.0 6.5e-175 611.3
Cpe02g01140 CCT 1 623 EXO70 exocyst subunit family AT1G07000 50.9 5.2e-172 601.7
Cpe08g00067 . 58 671 EXO70 exocyst subunit family AT5G13150 51.5 1.9e-167 586.6
Cpe03g01216 . 62 676 EXO70 exocyst subunit family AT5G13150 50.2 2.7e-166 582.8
Cpe13g00544 . 66 602 EXO70 exocyst subunit family AT5G13150 51.1 1.5e-153 540.4
Cpe01g01977 . 81 677 EXO70 exocyst subunit family AT5G13990 54.5 1.6e-185 646.7
Cpe13g00544 . 64 603 EXO70 exocyst subunit family AT5G13990 56.4 3.4e-175 612.5
Cpe03g01013 . 12 611 EXO70 exocyst subunit family AT1G72470 64.1 9.8e-214 740.3
Cpe02g01761 CCT,ECH 12 599 EXO70 exocyst subunit family AT1G72470 61.7 4.0e-199 691.8
Cpe03g01013 . 12 609 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-208 723.4
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT1G54090 59.8 1.1e-193 673.7
Cpe03g01013 . 9 610 EXO70 exocyst subunit family AT3G14090 63.4 1.4e-217 753.1
Cpe02g01761 CCT,ECH 9 594 EXO70 exocyst subunit family AT3G14090 61.3 1.1e-201 700.3
Cpe04g01614 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 62.8 9.9e-228 786.9
Cpe18g00900 . 13 651 EXO70 exocyst subunit family AT5G50380 62.2 2.9e-227 785.4
Cpe09g00962 CCT 15 654 EXO70 exocyst subunit family AT5G50380 62.6 1.1e-226 783.5
Cpe20g00308 CCT,CST 17 624 EXO70 exocyst subunit family AT5G50380 61.6 3.4e-212 735.3
Cpe11g00545 . 15 684 EXO70 exocyst subunit family AT4G31540 73.3 5.7e-292 1000.3
Cpe07g00257 . 55 722 EXO70 exocyst subunit family AT4G31540 73.1 1.7e-291 998.8
Cpe01g00211 . 35 591 EXO70 exocyst subunit family AT3G55150 50.3 2.3e-146 516.5
Cpe01g01118 . 9 591 EXO70 exocyst subunit family AT2G39380 50.7 5.9e-150 528.5
Cpe03g00140 . 26 630 EXO70 exocyst subunit family AT3G09520 55.5 1.1e-180 630.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022053 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe02g01761 Cpe_Chr02 FPKM 13.223742 13.267126 17.541424 16.758442 5.324718 4.058289 4.447579 18.373011 22.028374 21.192318