Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g01767 | ATGCAACTGGCACCAAATAATGATGAAAATGCACCCATTTTAAGTCAATTGGATTTTCAGCCACAATCTGTGGAATCGTCATCCCCGGCTGAGATTATTGTCATAGGGAGAGAGAGCTCCGTTACGGATGATGATTTACACAATCCTAACGTTGATGAAACTTGTCACCTGGTGAACGCAGACCTACCGCAATGTCGGATATGCCTCGACACCGGAGGAGAAGATTTAATCGCTCCATGCCACTGCAAAGGCACTCAGAAGTATGTCCATAGATTATGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCATGATACGTGCAAATGTCCCTACTGATCGCTGGTGGTTAAGACTGAAGTTTCAGTTTCTCGTTGCTAGAGACCATGCGTTCATTTTCATCATTGTTCAGCTGATCGTGGCATTCTTGGGTGTGTTGGTGTACAAATTCTACGGGGAGGAACTAAGGGAAATGTTTGGTTACGAAGAACACCCATATGGGTTCTACGCCATGGCTGTCTTGGCTATCATCTTGGTTGGATTACTCTACGGATTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAACTGACAAAGGAGTATATAGTCGAAGATCGAGAACATAACAAAAGTGTTCCTGAACTAGACCCCAGACATGTTATGGAGCTAAGGATGTTAGGCCTGTATTAA | 759 | 44.14 | MQLAPNNDENAPILSQLDFQPQSVESSSPAEIIVIGRESSVTDDDLHNPNVDETCHLVNADLPQCRICLDTGGEDLIAPCHCKGTQKYVHRLCLDNWRSTKEGFAFAHCTECRAMFMIRANVPTDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKSVPELDPRHVMELRMLGLY | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 14365585 | 14372702 | - | Cp4.1LG02g17630.1 | Cpe02g01767 | 465716 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g01767 | 252 | CDD | RING_CH-C4HC3_MARCH | 65 | 113 | - | - | |
| Cpe02g01767 | 252 | SUPERFAMILY | RING/U-box | 61 | 116 | - | - | |
| Cpe02g01767 | 252 | Pfam | RING-variant domain | 65 | 112 | IPR011016 | GO:0008270 | |
| Cpe02g01767 | 252 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 8 | 251 | - | - | |
| Cpe02g01767 | 252 | SMART | ringv_2 | 64 | 113 | IPR011016 | GO:0008270 | |
| Cpe02g01767 | 252 | PANTHER | OS02G0132300 PROTEIN | 8 | 251 | - | - | |
| Cpe02g01767 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 118 | IPR013083 | - | |
| Cpe02g01767 | 252 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 57 | 119 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g01767 | Cpe-Chr2:14365585 | Cpe10g00582 | Cpe-Chr10:3390404 | 1.43E-11 | dispersed | |
| Cpe02g01767 | Cpe-Chr2:14365585 | Cpe03g01002 | Cpe-Chr3:8210858 | 8.25E-176 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g01767 | - | - | cpep:111788515 | 486.108 |