Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00004 ATGGGAAACTGCGGTACTAGAGAAGAGCCTGCAGTTGTTTCCAATGCTCAAGTTCAACAGCTGCATACTTCATCGTCTTCCTTGGTTGTGAAAAGCGCCAGCAACAATGCTCCAGATAAAAGACATATTCATAACCGGTCCATATCAGATCTAAGCGATCCCTCGACCCCTCGCAACCTCGAGGACTTTAGAAACAATTCGGTGCTTTACACACATGTTATTGCCTTCACATTATACGAGCTGGAAACGATCACCAAGAGTTTCCGCTCCGATTACATTCTCGGAGAGGGCGGTTTTGGAACTGTTTATAAAGGCTACATTGATGAGAACGTCAGGGTTGGCCTCAAATCTCTTCCCGTCGCTGTCAAGGTTCTCAACAAGGAAGGCCTGCAGGGCCACCGAGAATGGCTTACAGAAGTCAACTTTCTTGGTCAGCTGAGACATCCAAACCTTGTCAAGTTGATTGGTTACTGCTGCGAGGATGATCACAGATTACTTGTCTACGAGTTCATGTTTAGAGGAAGCCTTGAAAACCACCTCTTTCGAAGTACATACTTATCTTGA 564 45.74 MGNCGTREEPAVVSNAQVQQLHTSSSSLVVKSASNNAPDKRHIHNRSISDLSDPSTPRNLEDFRNNSVLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRSTYLS 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20132 23514 - Cp4.1LG03g03350.1 Cpe03g00004 465721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00004 187 Pfam Protein tyrosine and serine/threonine kinase 93 182 IPR001245 GO:0004672|GO:0006468
Cpe03g00004 187 ProSiteProfiles Protein kinase domain profile. 88 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00004 187 MobiDBLite consensus disorder prediction 27 57 - -
Cpe03g00004 187 ProSitePatterns Protein kinases ATP-binding region signature. 94 123 IPR017441 GO:0005524
Cpe03g00004 187 PANTHER OS01G0588500 PROTEIN-RELATED 34 183 - -
Cpe03g00004 187 PANTHER - 34 183 - -
Cpe03g00004 187 SUPERFAMILY Protein kinase-like (PK-like) 65 184 IPR011009 -
Cpe03g00004 187 Gene3D Phosphorylase Kinase; domain 1 53 170 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00004 Cpe08g01270 CCT
Cpe03g00004 Cpe08g01270 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00004 Cpe-Chr3:20132 Cpe04g01020 Cpe-Chr4:9076529 3.68E-54 dispersed
Cpe11g00657 Cpe-Chr11:4362672 Cpe03g00004 Cpe-Chr3:20132 7.85E-46 dispersed
Cpe03g00004 Cpe-Chr3:20132 Cpe08g01270 Cpe-Chr8:9167132 2.17E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62258 PF07714 PK_Tyr_Ser-Thr 2.30E-17 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00004 - - csv:101220268 352.443