Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00011 ATGCTTTTCAAACTACTATTCCTCCTTCTTGCCTTAGCTCCTGCTTCCATTTATGCTTTGGAGGACACTGTTTTCAACGATGACGTTCTGGGATTGATAGTATTTAAAGCTGGCCTTCAAGATCCCATGGGGAAACTGGTCACATGGAATGAAGACGACCAAACTCCCTGCAACTGGATTGGTGTCAAATGCGATCCTAAAACCAATAGGGTCTCTGAGCTCGTCCTTGATGGATTCTCTTTGTGTGGTCATATCGATCGTGGACTCCTCAGGTTGCAATTCCTTCAAATACTCTCCCTTGCTAACAACAACTTCACTGGCACCATCAACTCTGCTCTTTCTCACCTTGCAAATTTGCAAGTTATTGATTTGAGTGGCAACAGCTTATCTGGAACCATTCCCCAACAACTTTTCCTGCAATCTGGGTCTGTAAGACTTGTTTCATTCGCCAAAAATAAGCTTACAGGAAATATCCCTCAATCCTTAACCACTTGCTTCTCTCTGGAGCTTCTCAACTTCTCATCCAACCACCTCTCCGGGAAATTGCCTTCTGGGTTATGGTATTTGAGGGGGCTTCAGTCTTTGGATGTCTCTCACAACTTGCTTCAGGGGCACATTCCTCCAGGAATCCAAAATTTATACGATTTGAGATTTCTTAGCTTACACAAGAATCGATTTTCCGGAAAGCTTCCTGAGGATATTGGTGGCTGCCTACTCTTAAAATCAATTGATTTTAGTGAGAATATCCTTTCCGGGGGCCTTCCACACTCAATGCAGATGCTTACTTCTTGCACTTATCTGAATTTACGAGGAAATTCTCTCACGGGTGAACTCCCTCCTTGGATTGGAGAACTTAAAAATCTCGAGACCTTAGATCTTTCTTCCAATAACTTCTCTGGTCGGGTACCAAGTTCAATAGGCAACCTCCAATTATTGAAGAGCTTTAATGTATCCATGAACTATTTAACTGGAAGCTTGCCAGAATCCATGGCAAATTGTAATAGTCTCTTCAGTATTGATGCTAGCCATAATCACTTGTCTGGAAATCTCCCTTCGTGGATGTTTAGGGGAGCTATGCCAAGTGTTCCACTTTCTTCGCAGAGGCTGGGAGAAAACCTTTCATCTCCGGCCTCTCTTGGTAGTCTCCAAGTTTTGGATTTATCTTCAAATGTTTTCTGTGGTCACATTCCATCCAATGTGGGAGAACTTGGCAACTTGCAGTTGCTGAACATATCCAGAAACCATCTGGTGGGTTGTATTCCAGGGAGCATTGGTGAACTAAAATCAGCATATGCCCTTGACTTCAGTGTGAATCAATTAAATGGAAGTATTCCTGCTGAAATTGGAGGAGCGATCTCACTCAAGGAGTTGAGGTTGGAGCAGAACTTCCTGGCTGGGGAAATCCCAGTCCAGATTCACAAATGTTCGTTGTTAACATCGTTGATTCTTTCTCACAACAACCTGACAGGCCCAATTCCTGCTGCCCTCGCAAATCTCTCCAATCTTGAAAATGTGGACTTGTGTTTCAACAGACTTTCCGGAAGCCTGCCCAGGGAGCTCATTAATCTCTCCCACCTCCTCTCCTTTAATATCTCCCACAATCATCTTGAGGGAGAACTTCCAGTTGGGGGCTTCTTCAACACTATATCTCCCTTCTCTATATCACATAACCCATCTCTTTGTGGTGCTGCTGTCAATACCTCCTGCCCCTCCCTCCATCCAAAACCGATTGTCCTAAACCCGAACTCTTCTGATACCAATGGAAATTCCCCCTCCCACAACCATCCCCATCAGATCATACTTACCATATCTTCCATTATTGCTATTGCTGCAGCTTCTTTTATCCTACTTGGTGTAGTGGCTGTCACCATCCTCAATATCCATGCAAGGTCCTCACACTCACGGTCTGCTGCTCTTGTGTTATCTGCTGGGGAGGACTTTAGCTGCTCCCCCAAAACTAATCCAGAATATGGAAACTTCGTCATGTTTTCTGGAGATGCAGAGTTTGTAGTTGGCGCCCAAACCTTACTGAACAAGGACGCTGAACTTGGTCGAGGTGGATTTGGGGTTGTTTACAAAACGGTGCTTCGAGATGGGTGTTTAGTTGCAATCAAGAAGCTAACTGTCACAAGCTTGATCAAGTCACGAGAAGATTTTGAGAGTGAAGTGAAGAAGCTGGGACAGATCAGGCATCACAATCTTGTGGCAATCGAAGGGTATTGCTGGACAGCCTCCATGCAGCTCCTAATTTATGAATACCTCCCCAGTGGAAGTTTGTATAAACATATACATGATAGAACTGGCGACAATTGTTTGTCTTGGCGGCAGAGGTTCAAGATTGTTCTTGGGATGGCCAAAGGGTTGGCGTATTTGCACCATAATGGTATCATTCACTACAACTTGAAGTCGACCAATGTTTTGATAGGCAGTTCTGGGAAACCAAAAGTGGGGGACTATGGCTTGGCAAGGTTGTTGCCAATGTTGGACCGTTGCATCTTAAGCAGTAAAATCCAAAGTGCTTTGGGATACATGGCTCCAGAGTTCGCCTGCAAAACAGTGACTATAACTGATAAGTGTGATGTGTATGGCTTTGGCATCTTGGCTTTGGAAGTGGTGACTGGAAAAAGACCTGTGGAGTACATGGAAGATGATGTTATAGTGCTCTGTGATATGGTGAGAGCAGCTTTGGATGAAGGCATGGTGGAGCAATGTGTCGATGAGAGGCTCCGATCGAACTTCCGCATTGAAGAGGCTATTCCTGTAATGAAACTGGGTTTGATATGTGCGTCCCAAGTACCGTCGAACAGGCCAGACATGAATGAGGTCGTCAATATACTAGAGTTGATCCAATCCCCCTCTGAAGCCGACGAGGAGTTGGAATGA 2883 44.75 MLFKLLFLLLALAPASIYALEDTVFNDDVLGLIVFKAGLQDPMGKLVTWNEDDQTPCNWIGVKCDPKTNRVSELVLDGFSLCGHIDRGLLRLQFLQILSLANNNFTGTINSALSHLANLQVIDLSGNSLSGTIPQQLFLQSGSVRLVSFAKNKLTGNIPQSLTTCFSLELLNFSSNHLSGKLPSGLWYLRGLQSLDVSHNLLQGHIPPGIQNLYDLRFLSLHKNRFSGKLPEDIGGCLLLKSIDFSENILSGGLPHSMQMLTSCTYLNLRGNSLTGELPPWIGELKNLETLDLSSNNFSGRVPSSIGNLQLLKSFNVSMNYLTGSLPESMANCNSLFSIDASHNHLSGNLPSWMFRGAMPSVPLSSQRLGENLSSPASLGSLQVLDLSSNVFCGHIPSNVGELGNLQLLNISRNHLVGCIPGSIGELKSAYALDFSVNQLNGSIPAEIGGAISLKELRLEQNFLAGEIPVQIHKCSLLTSLILSHNNLTGPIPAALANLSNLENVDLCFNRLSGSLPRELINLSHLLSFNISHNHLEGELPVGGFFNTISPFSISHNPSLCGAAVNTSCPSLHPKPIVLNPNSSDTNGNSPSHNHPHQIILTISSIIAIAAASFILLGVVAVTILNIHARSSHSRSAALVLSAGEDFSCSPKTNPEYGNFVMFSGDAEFVVGAQTLLNKDAELGRGGFGVVYKTVLRDGCLVAIKKLTVTSLIKSREDFESEVKKLGQIRHHNLVAIEGYCWTASMQLLIYEYLPSGSLYKHIHDRTGDNCLSWRQRFKIVLGMAKGLAYLHHNGIIHYNLKSTNVLIGSSGKPKVGDYGLARLLPMLDRCILSSKIQSALGYMAPEFACKTVTITDKCDVYGFGILALEVVTGKRPVEYMEDDVIVLCDMVRAALDEGMVEQCVDERLRSNFRIEEAIPVMKLGLICASQVPSNRPDMNEVVNILELIQSPSEADEELE 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 53564 57158 + Cp4.1LG03g03390.1 Cpe03g00011 465728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00011 960 SMART LRR_typ_2 379 403 IPR003591 -
Cpe03g00011 960 SMART LRR_typ_2 285 309 IPR003591 -
Cpe03g00011 960 SMART LRR_typ_2 189 212 IPR003591 -
Cpe03g00011 960 SMART LRR_typ_2 92 115 IPR003591 -
Cpe03g00011 960 SMART LRR_typ_2 523 547 IPR003591 -
Cpe03g00011 960 SMART LRR_typ_2 116 140 IPR003591 -
Cpe03g00011 960 SMART LRR_typ_2 213 237 IPR003591 -
Cpe03g00011 960 Gene3D Transferase(Phosphotransferase) domain 1 754 959 - -
Cpe03g00011 960 Pfam Protein tyrosine and serine/threonine kinase 678 945 IPR001245 GO:0004672|GO:0006468
Cpe03g00011 960 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Cpe03g00011 960 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 8 951 - -
Cpe03g00011 960 SUPERFAMILY Protein kinase-like (PK-like) 680 952 IPR011009 -
Cpe03g00011 960 ProSiteProfiles Protein kinase domain profile. 677 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00011 960 Gene3D Ribonuclease Inhibitor 26 185 IPR032675 -
Cpe03g00011 960 ProSitePatterns Protein kinases ATP-binding region signature. 683 706 IPR017441 GO:0005524
Cpe03g00011 960 Gene3D Ribonuclease Inhibitor 189 361 IPR032675 -
Cpe03g00011 960 PRINTS Leucine-rich repeat signature 119 132 - -
Cpe03g00011 960 PRINTS Leucine-rich repeat signature 285 298 - -
Cpe03g00011 960 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 951 - -
Cpe03g00011 960 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Cpe03g00011 960 Gene3D Phosphorylase Kinase; domain 1 667 753 - -
Cpe03g00011 960 Gene3D Ribonuclease Inhibitor 364 572 IPR032675 -
Cpe03g00011 960 SUPERFAMILY L domain-like 43 355 - -
Cpe03g00011 960 SUPERFAMILY RNI-like 254 561 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00011 Cpe08g01262 CCT
Cpe03g00011 Cpe08g01262 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00011 Cpe-Chr3:53564 Cpe03g01247 Cpe-Chr3:10112947 1.69E-20 dispersed
Cpe01g00084 Cpe-Chr1:504888 Cpe03g00011 Cpe-Chr3:53564 0 wgd
Cpe13g01035 Cpe-Chr13:8499842 Cpe03g00011 Cpe-Chr3:53564 0 wgd
Cpe03g00011 Cpe-Chr3:53564 Cpe08g01262 Cpe-Chr8:9123959 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62259 PF07714 PK_Tyr_Ser-Thr 1.70E-41 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00011 - - csv:101222148 1623.99