Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00029 ATGAATAACATAAACCAATCGGTAAATACAGTGGCGGGCGGATCTTGTGAGAAGAGAACCAATGGTTTGGGTATGGAAGCTCCGAAATTCAAGTCTCTTCAGCCGCCTCCATTCCCCATGTCTCCTTCTTCTTACCTATCCGCCTTCTCTTCTGGTTTAAGCCCCACTGAGCTTCTCAATTCCCCTCTCTTCTCCTTTGGTCTTTTTCCTTCTCCTACTACTGCTTCCTTCAACTTCAGAAATGATTACGATGATGCCGACCACCAAGAAATGAAGGCGGATGTCAAAAATTACTCCAATTCTTCGTTTAACCCTCAAACAAGATCCTCTGTTTCGTCTTATTTTCAGTCCTCTTCTTCCAACGTGACTCCACTGAATCCAGGCGGTTTGTCGTGTGATGAAAGTGGAGCGAAATCTGAAGTCGTTGCCACAGATATGGCGGCAGCTCAATCAAACCCAGTTTCTCAGCTACCTGTTTACAGCAGAGAACAGAAAAAATCGGAGAACGATGGATATAACTGGAGAAAATATGGGCAAAAACAAGTGAAAGGAAGCGAAAATCCACGAAGTTATTACAAGTGCACTTTTCCCAATTGCCCAACCAAGAAGAAAGTGGAAAGATCTTTAGATGGCCAAATCACTGAGATTGTTTACAAGGGAAGCCATAATCACGCCAAGCCCCAGCCCACAAGACGTTCCGGTAACTCCGCCGTTTACGACCCGTCGGCGGCGGAATCCACCTTGCTGCGGGAGGATTCCTCCGTCTCAGTGGGGGACGATGAAGTCGAACCCAATTCGCCGTTTAGCAACTCGGTGGACGACAATGAAAATGAACCGGAATCTAAAAGATGGAAAGGGGAAAATGAAAATGAGGGATTTTCTGGGGGTGGAAGCAGAACAGTGAAAGAGCCAAGAATTGTGGTTCAAACAACGAGCGAAATTGACATACTGCCTGATGGCTATAGATGGAGGAAATACGGACAAAAAGTGGTGAAAGGAAATCCAAATCCGAGGAGCTACTACAAGTGCACATCTTTAGGGTGCCCTGTAAGGAAACACATAGAGCGGGCGGCCAACGACATGAGGGCCGTGATCACTACCTACGAAGGCAAACACAACCACGAAGTCCCTGCAGCACGCGGCGGCGGTGGAAGCTTCTACAACGCCGTCAATCGACCTGTACCCGCCAACATTCCAATGCCAGTGAGGCCATCCGCTGCCGTCAGCCATTCTTTCCCGACAAATTTTCCGGCCACCTTCCTGGCTGGAAATATAAACATGTCAGAAATAGGAGCACGAGCAGCATCATCATCATTCCCGTTTCAGACATCACAAGGAGTGCCCCCAAGTTTTCAAGTTTCAGGATTTGGAACAGCCGCCAAGGAAGAGGCCGAAGACAACATGTTCTTCAACTCATTTCTATCTTAG 1428 47.62 MNNINQSVNTVAGGSCEKRTNGLGMEAPKFKSLQPPPFPMSPSSYLSAFSSGLSPTELLNSPLFSFGLFPSPTTASFNFRNDYDDADHQEMKADVKNYSNSSFNPQTRSSVSSYFQSSSSNVTPLNPGGLSCDESGAKSEVVATDMAAAQSNPVSQLPVYSREQKKSENDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHAKPQPTRRSGNSAVYDPSAAESTLLREDSSVSVGDDEVEPNSPFSNSVDDNENEPESKRWKGENENEGFSGGGSRTVKEPRIVVQTTSEIDILPDGYRWRKYGQKVVKGNPNPRSYYKCTSLGCPVRKHIERAANDMRAVITTYEGKHNHEVPAARGGGGSFYNAVNRPVPANIPMPVRPSAAVSHSFPTNFPATFLAGNINMSEIGARAASSSFPFQTSQGVPPSFQVSGFGTAAKEEAEDNMFFNSFLS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 148105 155971 - Cp4.1LG03g03290.1 Cpe03g00029 465746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00029 475 MobiDBLite consensus disorder prediction 1 35 - -
Cpe03g00029 475 MobiDBLite consensus disorder prediction 227 274 - -
Cpe03g00029 475 ProSiteProfiles WRKY domain profile. 163 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 20 453 IPR044810 GO:0003700
Cpe03g00029 475 Pfam WRKY DNA -binding domain 319 375 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 Pfam WRKY DNA -binding domain 169 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 MobiDBLite consensus disorder prediction 148 174 - -
Cpe03g00029 475 MobiDBLite consensus disorder prediction 217 299 - -
Cpe03g00029 475 MobiDBLite consensus disorder prediction 1 16 - -
Cpe03g00029 475 MobiDBLite consensus disorder prediction 275 289 - -
Cpe03g00029 475 ProSiteProfiles WRKY domain profile. 312 377 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 MobiDBLite consensus disorder prediction 148 162 - -
Cpe03g00029 475 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 20 453 - -
Cpe03g00029 475 SUPERFAMILY WRKY DNA-binding domain 309 377 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 SUPERFAMILY WRKY DNA-binding domain 164 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 Gene3D WRKY domain 154 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 SMART WRKY_cls 317 376 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 SMART WRKY_cls 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe03g00029 475 Gene3D WRKY domain 304 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01138 Cpe-Chr2:10375710 Cpe03g00029 Cpe-Chr3:148105 1.48E-116 dispersed
Cpe03g00029 Cpe-Chr3:148105 Cpe05g00995 Cpe-Chr5:6508052 2.08E-81 dispersed
Cpe18g00567 Cpe-Chr18:6177793 Cpe03g00029 Cpe-Chr3:148105 2.83E-18 dispersed
Cpe03g00029 Cpe-Chr3:148105 Cpe14g00818 Cpe-Chr14:6556851 3.25E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49128 PF03106 WRKY 9.50E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00029 K13424 - csv:101205651 732.635