Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00039 ATGAACAACACCGCCCAGCCGGGAAACATGGCCGCCGGATCCCCGCCATGGCTGAACACCGGCGACAACTCTTGGCAAATTACAGCCTCCACTCTCGTCGGACTTCAGAGCATGCCTGGCCTTGTGATTCTCTACGCCAGCATCGTCAAAAAGAAATGGGCTGTCAATTCTGCCTTTATGGTCCTCTACGCCTTCGCCGCCGTTCTAATTTGTTGGGTCCTCGTCGGTTACCGAATGGCCTTTGGCGACCAGCTGGTTCCTCTGTGGGGCAAAGGGATTCCAGCTCTGACCCAAAGTTACCTAATTGACCGAGCTAATATCCCTGAGAGTGGCAATACAAACAACGATGGAAGGGTAACGCTCAGAATTGAACCCAATATTCCGATGGCTTCGCTTGTGTATTTCCAGTTCACTTTTGCTGCGATTACGGTGATTTTACTGGCTGGCTCTGTTCTTGCAAGAATGAACATCAAAGCTTGGATGGCGTTTGTTCCTCTTTGGGTAATTTTCGCATACACCGTCGGAGCATATTCTGTTTGGGGCGGAGGGTTTCTCTTTCAATGGGGCGTAATTGATTACTCCGGCGGCTACGTGATCCATCTCTCTTCAGGGATTGCTGGCCTGACCGCCGCTTATTGGGTTGGGCCGAGGATTAAGAGTGACAGGGAGAGGTTTCCGCCCAATAACGTACTGCTGATGCTGGCCGGAGCAGGGCTGCTGTGGATGGGATGGTCTGGATTTAACGGCGGGGCGCCGCACTCGGCGAACGTGGTCGCGTCGATAGCTGTGCTGAATACGAACGTGAGCGCCGCGACGAGCCTGCTGGTGTGGACCATTTTGGACGTGTTGTACTTTGGGAAGCCATCGGTGATTGGAGCCATTCAGGGTATGATGACTGGCTTGGCTTGCGTTACTCCCGGCGCAGGAGTAGTGCAGACGTGGGCGGCTATGATAATGGGGATTCTGGGAGGGAGTATTCCATGGGTATCCATGATGGTCCTTCATAAAAAATCGAGTTTCTTGCAAAAGGCTGACGACACGCTCGGCGTATTTCACACGCACGCGGTGGCGGGAATGATGGGCGGGCTTTTAACAGGGCTTTTAGCCGAGCCCACTCTATGCGATCTATACCTACCGATAACCGGCACACGCGGAGCCTTTTACGGCAAAAACGGCGGCGTTCAATTCCTGAAACAACTGGCCGGATCCGCGTTTATTATAGGATGGAACGTAGTGTCTACGACCATAATACTCCTCTTTATTCGGCTGTTTATGCCATTGAGGATGCCTGACGAGGCACTTATGATCGGCGATGACGCCGTCCACGGCGAGGAGGCTTATGCTCTTTGGGGCGACGGCGAGAAATTCGATCCCAGAAGGCACGGCACTGCGGGGAACAATATTGAAGAAGGAACGGCCTCGCCTTATATCCATGGTGCTAGAGGAGTGATAATCGAGTTGTAA 1464 53.07 MNNTAQPGNMAAGSPPWLNTGDNSWQITASTLVGLQSMPGLVILYASIVKKKWAVNSAFMVLYAFAAVLICWVLVGYRMAFGDQLVPLWGKGIPALTQSYLIDRANIPESGNTNNDGRVTLRIEPNIPMASLVYFQFTFAAITVILLAGSVLARMNIKAWMAFVPLWVIFAYTVGAYSVWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRIKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPHSANVVASIAVLNTNVSAATSLLVWTILDVLYFGKPSVIGAIQGMMTGLACVTPGAGVVQTWAAMIMGILGGSIPWVSMMVLHKKSSFLQKADDTLGVFHTHAVAGMMGGLLTGLLAEPTLCDLYLPITGTRGAFYGKNGGVQFLKQLAGSAFIIGWNVVSTTIILLFIRLFMPLRMPDEALMIGDDAVHGEEAYALWGDGEKFDPRRHGTAGNNIEEGTASPYIHGARGVIIEL 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 202500 205610 + Cp4.1LG03g03140.1 Cpe03g00039 465756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00039 487 Gene3D Ammonium transporter AmtB like domains 2 450 IPR029020 -
Cpe03g00039 487 PRINTS Rhesus blood group protein signature 136 152 IPR002229 GO:0005887
Cpe03g00039 487 PRINTS Rhesus blood group protein signature 231 249 IPR002229 GO:0005887
Cpe03g00039 487 PRINTS Rhesus blood group protein signature 262 284 IPR002229 GO:0005887
Cpe03g00039 487 PRINTS Rhesus blood group protein signature 317 335 IPR002229 GO:0005887
Cpe03g00039 487 PANTHER AMMONIUM TRANSPORTER MEP2 10 484 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe03g00039 487 SUPERFAMILY Ammonium transporter 17 429 - -
Cpe03g00039 487 TIGRFAM amt: ammonium transporter 22 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Cpe03g00039 487 ProSitePatterns Ammonium transporters signature. 192 217 IPR018047 GO:0008519|GO:0016020|GO:0072488
Cpe03g00039 487 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Cpe03g00039 487 PANTHER AMMONIUM TRANSPORTER 2 10 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00039 Cpe-Chr3:202500 Cpe11g00346 Cpe-Chr11:1878520 0 dispersed
Cpe03g00039 Cpe-Chr3:202500 Cpe08g01238 Cpe-Chr8:8977126 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00039 K03320 - csv:101207321 882.093