Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00048 | ATGGAAGGACATCATCCCCATCACCTTATTCCGCTCCACCACCAGCAACAGTTTCAACTCCGTCCGCCGTCGCATCTCCACCCGAGCCTCACCGTCTCCGCCGATCCAACCCTAGCCGCCGCCGCCGCCGCCACCGACAGATTCCCCCAATGGAGCCTTCAGGAAACAAAGGAGTTTTTAACGATCAGAGCCGAGCTGGATCAGACTTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACATCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCATTATAAGGGTTGTGAAACAATGGAGCCAGAAAATTTAAGGCAACAATTTCCATTCTACACAGAGCTAAAAGCAATTTTCGGAGCAAGAATGCAAAGGATGTTCATGGCGGAGGCGGAGAGCGGTGGGAGTGGATCGAAGAAGAAGATGAAGACATTATCGTCCGACGACGAGGAAGAAAACGAAGACAGTAACGGCGACGGGGGCGAGACGAAGGTTAAGAGTAGGAAGAGGAAGAAGGTTAAAGGAACGATGATGGCGACGGACGGCGGAGGGGGAAGCGGTAGCCGTTTGAAAGAAATATTGGAAGATTTCATGAATCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAGGAGAGGGAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTGGAACATGAGAGGATTATGTTGGAAAGAAGTTGGAGGGAAAGAGAAGAACAAAGGAGAATGAGAGAGGAAATTAGGGGTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGATTAGAAGAGATGATCATATGTAG | 888 | 47.41 | MEGHHPHHLIPLHHQQQFQLRPPSHLHPSLTVSADPTLAAAAAATDRFPQWSLQETKEFLTIRAELDQTFMETKRNKLLWEITSSKMKEKGFNRSAEQCKCKWKNLVTHYKGCETMEPENLRQQFPFYTELKAIFGARMQRMFMAEAESGGSGSKKKMKTLSSDDEEENEDSNGDGGETKVKSRKRKKVKGTMMATDGGGGSGSRLKEILEDFMNQQMQMEVQWREAFEAREKEREMREMEWRRNMEALEHERIMLERSWREREEQRRMREEIRGEKRDALITALLNKIRRDDHM | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 258925 | 260592 | - | Cp4.1LG03g03030.1 | Cpe03g00048 | 465765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00048 | 295 | Pfam | Myb/SANT-like DNA-binding domain | 50 | 134 | IPR044822 | - | |
Cpe03g00048 | 295 | MobiDBLite | consensus disorder prediction | 146 | 204 | - | - | |
Cpe03g00048 | 295 | Gene3D | - | 51 | 112 | - | - | |
Cpe03g00048 | 295 | ProSiteProfiles | Myb-like domain profile. | 51 | 107 | IPR001005 | - | |
Cpe03g00048 | 295 | PANTHER | - | 1 | 292 | - | - | |
Cpe03g00048 | 295 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 1 | 292 | - | - | |
Cpe03g00048 | 295 | CDD | GT1 | 49 | 114 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00048 | Cpe10g00956 | CCT | |
Cpe03g00048 | Cpe08g01227 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00526 | Cpe-Chr1:3024161 | Cpe03g00048 | Cpe-Chr3:258925 | 4.10E-38 | dispersed | |
Cpe03g00048 | Cpe-Chr3:258925 | Cpe03g00245 | Cpe-Chr3:1218733 | 9.33E-13 | dispersed | |
Cpe10g00956 | Cpe-Chr10:5403241 | Cpe03g00048 | Cpe-Chr3:258925 | 1.98E-54 | wgd | |
Cpe03g00048 | Cpe-Chr3:258925 | Cpe08g01227 | Cpe-Chr8:8927691 | 1.26E-117 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49129 | PF13837 | Myb_DNA-bind_4 | 2.00E-17 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00048 | - | - | csv:101211490 | 372.859 |