Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00048 ATGGAAGGACATCATCCCCATCACCTTATTCCGCTCCACCACCAGCAACAGTTTCAACTCCGTCCGCCGTCGCATCTCCACCCGAGCCTCACCGTCTCCGCCGATCCAACCCTAGCCGCCGCCGCCGCCGCCACCGACAGATTCCCCCAATGGAGCCTTCAGGAAACAAAGGAGTTTTTAACGATCAGAGCCGAGCTGGATCAGACTTTCATGGAAACCAAACGAAACAAGCTCTTGTGGGAAATTACATCCTCCAAAATGAAGGAAAAGGGTTTCAATCGCAGCGCTGAACAGTGTAAATGTAAATGGAAAAACCTCGTTACTCATTATAAGGGTTGTGAAACAATGGAGCCAGAAAATTTAAGGCAACAATTTCCATTCTACACAGAGCTAAAAGCAATTTTCGGAGCAAGAATGCAAAGGATGTTCATGGCGGAGGCGGAGAGCGGTGGGAGTGGATCGAAGAAGAAGATGAAGACATTATCGTCCGACGACGAGGAAGAAAACGAAGACAGTAACGGCGACGGGGGCGAGACGAAGGTTAAGAGTAGGAAGAGGAAGAAGGTTAAAGGAACGATGATGGCGACGGACGGCGGAGGGGGAAGCGGTAGCCGTTTGAAAGAAATATTGGAAGATTTCATGAATCAACAAATGCAAATGGAGGTGCAATGGAGGGAGGCATTTGAGGCAAGGGAAAAGGAGAGGGAAATGAGGGAAATGGAGTGGAGAAGGAACATGGAAGCTTTGGAACATGAGAGGATTATGTTGGAAAGAAGTTGGAGGGAAAGAGAAGAACAAAGGAGAATGAGAGAGGAAATTAGGGGTGAGAAAAGAGATGCCTTAATCACAGCTTTGTTAAACAAGATTAGAAGAGATGATCATATGTAG 888 47.41 MEGHHPHHLIPLHHQQQFQLRPPSHLHPSLTVSADPTLAAAAAATDRFPQWSLQETKEFLTIRAELDQTFMETKRNKLLWEITSSKMKEKGFNRSAEQCKCKWKNLVTHYKGCETMEPENLRQQFPFYTELKAIFGARMQRMFMAEAESGGSGSKKKMKTLSSDDEEENEDSNGDGGETKVKSRKRKKVKGTMMATDGGGGSGSRLKEILEDFMNQQMQMEVQWREAFEAREKEREMREMEWRRNMEALEHERIMLERSWREREEQRRMREEIRGEKRDALITALLNKIRRDDHM 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 258925 260592 - Cp4.1LG03g03030.1 Cpe03g00048 465765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00048 295 Pfam Myb/SANT-like DNA-binding domain 50 134 IPR044822 -
Cpe03g00048 295 MobiDBLite consensus disorder prediction 146 204 - -
Cpe03g00048 295 Gene3D - 51 112 - -
Cpe03g00048 295 ProSiteProfiles Myb-like domain profile. 51 107 IPR001005 -
Cpe03g00048 295 PANTHER - 1 292 - -
Cpe03g00048 295 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 1 292 - -
Cpe03g00048 295 CDD GT1 49 114 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00048 Cpe10g00956 CCT
Cpe03g00048 Cpe08g01227 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00526 Cpe-Chr1:3024161 Cpe03g00048 Cpe-Chr3:258925 4.10E-38 dispersed
Cpe03g00048 Cpe-Chr3:258925 Cpe03g00245 Cpe-Chr3:1218733 9.33E-13 dispersed
Cpe10g00956 Cpe-Chr10:5403241 Cpe03g00048 Cpe-Chr3:258925 1.98E-54 wgd
Cpe03g00048 Cpe-Chr3:258925 Cpe08g01227 Cpe-Chr8:8927691 1.26E-117 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49129 PF13837 Myb_DNA-bind_4 2.00E-17 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00048 - - csv:101211490 372.859