Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00051 ATGGAAATGGCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGACTATAGCGGTCGCCGCGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATCCTGGAATTGTTTCTTCGTACACTTACGATAAGGAAAATTTGTGCCTTTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATTAATTTTGCTAGGGATGGCATGAACAGAAAAGATTGGTTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTGTTTAGCTTGATGAACGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGAACACAAGGAAGCGCGAAGAGATCCAATGATGGGCAAGTGAAAAGCAATCCTAAACTTGCAGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAATTACAGTGCAGACGAGTTCTGGATTGGGTGCGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATATAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 753 46.22 MEMASTTPKTVEEIFKDYSGRRAALVRALAHDVDEFYGLCDPDPGIVSSYTYDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRTQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 277286 279785 - Cp4.1LG03g03110.1 Cpe03g00051 465768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00051 250 SUPERFAMILY FYVE/PHD zinc finger 185 248 IPR011011 -
Cpe03g00051 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Cpe03g00051 250 CDD PHD_AL_plant 196 246 IPR044104 -
Cpe03g00051 250 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
Cpe03g00051 250 MobiDBLite consensus disorder prediction 151 185 - -
Cpe03g00051 250 Pfam PHD-finger 197 245 IPR019787 -
Cpe03g00051 250 SMART PHD_3 196 244 IPR001965 -
Cpe03g00051 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Cpe03g00051 250 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 249 - -
Cpe03g00051 250 Pfam Alfin 10 145 IPR021998 GO:0006355|GO:0042393
Cpe03g00051 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 244 IPR013083 -
Cpe03g00051 250 MobiDBLite consensus disorder prediction 156 180 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00051 Cpe08g01225 CCT
Cpe03g00051 Cpe08g01225 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00051 Cpe-Chr3:277286 Cpe17g00469 Cpe-Chr17:3498302 9.90E-99 dispersed
Cpe01g00130 Cpe-Chr1:750940 Cpe03g00051 Cpe-Chr3:277286 8.04E-126 wgd
Cpe01g01035 Cpe-Chr1:6128234 Cpe03g00051 Cpe-Chr3:277286 1.08E-111 wgd
Cpe03g00051 Cpe-Chr3:277286 Cpe08g01225 Cpe-Chr8:8916056 6.57E-145 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49130 PF12165 Alfin 4.10E-63 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00051 - - csv:101211970 461.07