Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00051 | ATGGAAATGGCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGACTATAGCGGTCGCCGCGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATCCTGGAATTGTTTCTTCGTACACTTACGATAAGGAAAATTTGTGCCTTTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATTAATTTTGCTAGGGATGGCATGAACAGAAAAGATTGGTTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTGTTTAGCTTGATGAACGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGAACACAAGGAAGCGCGAAGAGATCCAATGATGGGCAAGTGAAAAGCAATCCTAAACTTGCAGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAATTACAGTGCAGACGAGTTCTGGATTGGGTGCGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATATAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG | 753 | 46.22 | MEMASTTPKTVEEIFKDYSGRRAALVRALAHDVDEFYGLCDPDPGIVSSYTYDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRTQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 277286 | 279785 | - | Cp4.1LG03g03110.1 | Cpe03g00051 | 465768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00051 | 250 | SUPERFAMILY | FYVE/PHD zinc finger | 185 | 248 | IPR011011 | - | |
Cpe03g00051 | 250 | ProSiteProfiles | Zinc finger PHD-type profile. | 194 | 246 | IPR019787 | - | |
Cpe03g00051 | 250 | CDD | PHD_AL_plant | 196 | 246 | IPR044104 | - | |
Cpe03g00051 | 250 | PANTHER | CPG BINDING PROTEIN | 4 | 249 | IPR045104 | GO:0006355|GO:0042393 | |
Cpe03g00051 | 250 | MobiDBLite | consensus disorder prediction | 151 | 185 | - | - | |
Cpe03g00051 | 250 | Pfam | PHD-finger | 197 | 245 | IPR019787 | - | |
Cpe03g00051 | 250 | SMART | PHD_3 | 196 | 244 | IPR001965 | - | |
Cpe03g00051 | 250 | ProSitePatterns | Zinc finger PHD-type signature. | 197 | 243 | IPR019786 | - | |
Cpe03g00051 | 250 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 4 | 249 | - | - | |
Cpe03g00051 | 250 | Pfam | Alfin | 10 | 145 | IPR021998 | GO:0006355|GO:0042393 | |
Cpe03g00051 | 250 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 244 | IPR013083 | - | |
Cpe03g00051 | 250 | MobiDBLite | consensus disorder prediction | 156 | 180 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00051 | Cpe08g01225 | CCT | |
Cpe03g00051 | Cpe08g01225 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00051 | Cpe-Chr3:277286 | Cpe17g00469 | Cpe-Chr17:3498302 | 9.90E-99 | dispersed | |
Cpe01g00130 | Cpe-Chr1:750940 | Cpe03g00051 | Cpe-Chr3:277286 | 8.04E-126 | wgd | |
Cpe01g01035 | Cpe-Chr1:6128234 | Cpe03g00051 | Cpe-Chr3:277286 | 1.08E-111 | wgd | |
Cpe03g00051 | Cpe-Chr3:277286 | Cpe08g01225 | Cpe-Chr8:8916056 | 6.57E-145 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49130 | PF12165 | Alfin | 4.10E-63 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00051 | - | - | csv:101211970 | 461.07 |