Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00051 ATGGAAATGGCCTCCACCACTCCCAAAACCGTCGAGGAAATTTTCAAAGACTATAGCGGTCGCCGCGCCGCTCTTGTTCGAGCCCTCGCTCACGATGTGGATGAATTCTACGGCCTCTGTGATCCAGATCCTGGAATTGTTTCTTCGTACACTTACGATAAGGAAAATTTGTGCCTTTATGGACATCCCAATGAAACATGGGAAGTGGTTCTTCCAGTAGAAGAGGTTCCACCGGAGCTTCCTGAGCCTGCACTTGGAATTAATTTTGCTAGGGATGGCATGAACAGAAAAGATTGGTTATCTCTAGTTGCTGTACATAGTGATTCCTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCAAGGCTTAACCGAAACGAAAGAAAGCGTTTGTTTAGCTTGATGAACGATCTTCCCACTGTCTTTGAAGTTGTGACAGAACGGAAGCCTGTCAAAGAGAAGCCTAGTGTAGATAGTGGAAGCAGAACACAAGGAAGCGCGAAGAGATCCAATGATGGGCAAGTGAAAAGCAATCCTAAACTTGCAGAACAGAGTTACGAGGAGGATGTCGATGAACATAGCGAAACCCTCTGCGGTAGCTGTGGTGAAAATTACAGTGCAGACGAGTTCTGGATTGGGTGCGACATCTGCGAAAGGTGGTACCACGGAAAGTGCGTAAAGATAACACCTGCTAAGGCTGATAGTATCAAACAATATAAATGTCCATCTTGCAGCATGAAGAAGGGCAGGCAGTAG 753 46.22 MEMASTTPKTVEEIFKDYSGRRAALVRALAHDVDEFYGLCDPDPGIVSSYTYDKENLCLYGHPNETWEVVLPVEEVPPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLMNDLPTVFEVVTERKPVKEKPSVDSGSRTQGSAKRSNDGQVKSNPKLAEQSYEEDVDEHSETLCGSCGENYSADEFWIGCDICERWYHGKCVKITPAKADSIKQYKCPSCSMKKGRQ 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 277286 279785 - Cp4.1LG03g03110.1 Cpe03g00051 465768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00051 250 SUPERFAMILY FYVE/PHD zinc finger 185 248 IPR011011 -
Cpe03g00051 250 ProSiteProfiles Zinc finger PHD-type profile. 194 246 IPR019787 -
Cpe03g00051 250 CDD PHD_AL_plant 196 246 IPR044104 -
Cpe03g00051 250 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
Cpe03g00051 250 MobiDBLite consensus disorder prediction 151 185 - -
Cpe03g00051 250 Pfam PHD-finger 197 245 IPR019787 -
Cpe03g00051 250 SMART PHD_3 196 244 IPR001965 -
Cpe03g00051 250 ProSitePatterns Zinc finger PHD-type signature. 197 243 IPR019786 -
Cpe03g00051 250 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 249 - -
Cpe03g00051 250 Pfam Alfin 10 145 IPR021998 GO:0006355|GO:0042393
Cpe03g00051 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 244 IPR013083 -
Cpe03g00051 250 MobiDBLite consensus disorder prediction 156 180 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00051 - - - csv:101211970 461.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00051 Cpe08g01225 CCT
Cpe03g00051 Cpe08g01225 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00051 Cpe-Chr3:277286 Cpe17g00469 Cpe-Chr17:3498302 9.90E-99 dispersed
Cpe01g00130 Cpe-Chr1:750940 Cpe03g00051 Cpe-Chr3:277286 8.04E-126 wgd
Cpe01g01035 Cpe-Chr1:6128234 Cpe03g00051 Cpe-Chr3:277286 1.08E-111 wgd
Cpe03g00051 Cpe-Chr3:277286 Cpe08g01225 Cpe-Chr8:8916056 6.57E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g250 . . . . . . . . Cmo06g00221 Cmo14g00058 . . . . . . Cpe08g01225 . . . . . . . . . . . . . . Cone3ag0428 Cone10ag0390 . . . . . Cme04g02724 . . . . . . Bma01g01801 . . . . Cma06g00227 Cma14g00064 Car06g00201 Car14g00046 Cpe03g00051 . Bhi11g01831 Tan08g2139 Cmetu08g0029 Lac10g3221 Hepe05g0086 . . Cla10g02093 Cam10g2172 Cec10g2211 Cco10g2197 Clacu10g2174 Cmu10g2914 Cre10g2315 Lsi03g02216 Csa03g03069 Chy04g02257 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g01069 . 52 292 Alfin-like Transcription Factor Family AT1G14510 69.4 3.7e-95 345.1
Cpe07g00574 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.8 3.1e-94 342.0
Cpe17g00469 CST 10 245 Alfin-like Transcription Factor Family AT1G14510 68.8 2.6e-93 339.0
Cpe11g00358 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 5.9e-93 337.8
Cpe11g01191 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.3 1.3e-92 336.7
Cpe12g00597 CST 10 251 Alfin-like Transcription Factor Family AT1G14510 66.3 9.4e-91 330.5
Cpe01g00797 CST 4 212 Alfin-like Transcription Factor Family AT1G14510 84.2 1.6e-90 329.7
Cpe14g00651 CST 1 218 Alfin-like Transcription Factor Family AT1G14510 80.3 1.4e-83 306.6
Cpe01g00130 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 4.5e-77 285.0
Cpe03g00051 CCT,ECH 8 247 Alfin-like Transcription Factor Family AT1G14510 58.0 8.5e-76 280.8
Cpe08g01225 CCT,ECH 8 236 Alfin-like Transcription Factor Family AT1G14510 57.0 9.7e-72 267.3
Cpe01g01035 CCT,ECH 9 215 Alfin-like Transcription Factor Family AT1G14510 51.7 7.7e-61 231.1
Cpe07g01069 . 44 294 Alfin-like Transcription Factor Family AT5G26210 75.6 1.1e-110 396.7
Cpe11g00358 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.2e-108 389.0
Cpe07g00574 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 8.5e-108 387.1
Cpe11g01191 . 1 250 Alfin-like Transcription Factor Family AT5G26210 73.6 1.9e-107 386.0
Cpe17g00469 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 1.0e-97 353.6
Cpe12g00597 CST 1 251 Alfin-like Transcription Factor Family AT5G26210 64.3 1.4e-94 343.2
Cpe01g00130 CCT,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 4.4e-80 295.0
Cpe03g00051 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G26210 56.6 7.0e-78 287.7
Cpe01g00797 CST 4 214 Alfin-like Transcription Factor Family AT5G26210 74.1 1.7e-76 283.1
Cpe08g01225 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT5G26210 54.9 7.5e-72 267.7
Cpe14g00651 CST 9 218 Alfin-like Transcription Factor Family AT5G26210 67.3 4.9e-63 238.4
Cpe01g01035 CCT,ECH 9 217 Alfin-like Transcription Factor Family AT5G26210 50.2 2.1e-61 233.0
Cpe07g01069 . 44 294 Alfin-like Transcription Factor Family AT3G42790 72.2 1.8e-102 369.4
Cpe11g00358 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.4e-99 359.0
Cpe11g01191 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.3 2.4e-99 359.0
Cpe07g00574 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 71.6 9.3e-99 357.1
Cpe17g00469 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 4.3e-96 348.2
Cpe12g00597 CST 1 251 Alfin-like Transcription Factor Family AT3G42790 62.3 2.9e-92 335.5
Cpe01g00130 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.5e-80 296.6
Cpe03g00051 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT3G42790 56.4 1.0e-76 283.9
Cpe08g01225 CCT,ECH 8 238 Alfin-like Transcription Factor Family AT3G42790 55.8 3.0e-73 272.3
Cpe01g00797 CST 4 214 Alfin-like Transcription Factor Family AT3G42790 70.6 5.7e-72 268.1
Cpe01g01035 CCT,ECH 9 217 Alfin-like Transcription Factor Family AT3G42790 52.1 7.4e-64 241.1
Cpe14g00651 CST 3 156 Alfin-like Transcription Factor Family AT3G42790 70.1 5.5e-59 224.9
Cpe01g00130 CCT,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 6.6e-110 394.0
Cpe03g00051 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G05610 72.9 5.8e-106 380.9
Cpe08g01225 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G05610 70.5 9.9e-98 353.6
Cpe01g01035 CCT,ECH 1 218 Alfin-like Transcription Factor Family AT5G05610 69.8 3.5e-95 345.1
Cpe17g00469 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 65.7 5.2e-91 331.3
Cpe07g01069 . 51 294 Alfin-like Transcription Factor Family AT5G05610 64.5 2.6e-90 328.9
Cpe11g01191 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.8e-90 327.8
Cpe07g00574 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.9 2.9e-89 325.5
Cpe11g00358 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 7.1e-88 320.9
Cpe12g00597 CST 10 248 Alfin-like Transcription Factor Family AT5G05610 63.8 1.7e-86 316.2
Cpe01g00797 CST 4 214 Alfin-like Transcription Factor Family AT5G05610 62.1 2.1e-68 256.1
Cpe14g00651 CST 9 173 Alfin-like Transcription Factor Family AT5G05610 64.1 4.2e-56 215.3
Cpe01g00130 CCT,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 9.3e-93 337.0
Cpe03g00051 CCT,ECH 53 250 Alfin-like Transcription Factor Family AT3G11200 77.2 1.8e-88 322.8
Cpe01g01035 CCT,ECH 41 218 Alfin-like Transcription Factor Family AT3G11200 77.3 6.2e-81 297.7
Cpe08g01225 CCT,ECH 43 239 Alfin-like Transcription Factor Family AT3G11200 71.8 1.7e-78 289.7
Cpe07g01069 . 87 294 Alfin-like Transcription Factor Family AT3G11200 63.4 4.3e-74 275.0
Cpe11g01191 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 7.4e-74 274.2
Cpe17g00469 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 9.6e-74 273.9
Cpe07g00574 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 63.6 1.8e-72 269.6
Cpe11g00358 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.0e-71 266.2
Cpe12g00597 CST 44 248 Alfin-like Transcription Factor Family AT3G11200 63.5 5.8e-71 264.6
Cpe01g00797 CST 1 214 Alfin-like Transcription Factor Family AT3G11200 62.6 3.8e-70 261.9
Cpe14g00651 CST 51 218 Alfin-like Transcription Factor Family AT3G11200 59.8 2.1e-44 176.4
Cpe14g00651 CST 1 169 Alfin-like Transcription Factor Family AT2G02470 81.1 1.1e-73 273.9
Cpe07g01069 . 44 201 Alfin-like Transcription Factor Family AT2G02470 75.9 1.8e-65 246.5
Cpe11g01191 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 3.1e-65 245.7
Cpe07g00574 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 5.2e-65 245.0
Cpe11g00358 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.0e-64 243.0
Cpe12g00597 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 1.4e-62 236.9
Cpe17g00469 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 1.9e-62 236.5
Cpe01g00797 CST 4 124 Alfin-like Transcription Factor Family AT2G02470 86.0 2.6e-56 216.1
Cpe08g01225 CCT,ECH 8 167 Alfin-like Transcription Factor Family AT2G02470 63.6 4.6e-53 205.3
Cpe01g00130 CCT,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 7.8e-53 204.5
Cpe03g00051 CCT,ECH 8 177 Alfin-like Transcription Factor Family AT2G02470 60.5 2.5e-51 199.5
Cpe01g01035 CCT,ECH 9 132 Alfin-like Transcription Factor Family AT2G02470 56.0 4.6e-37 152.1
Cpe07g01069 . 44 207 Alfin-like Transcription Factor Family AT5G20510 77.0 3.3e-72 268.5
Cpe07g00574 CCT,ECH 1 159 Alfin-like Transcription Factor Family AT5G20510 78.1 2.1e-71 265.8
Cpe11g00358 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 6.2e-71 264.2
Cpe17g00469 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 3.4e-69 258.5
Cpe12g00597 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 2.9e-68 255.4
Cpe11g01191 . 1 164 Alfin-like Transcription Factor Family AT5G20510 72.1 4.2e-67 251.5
Cpe14g00651 CST 9 176 Alfin-like Transcription Factor Family AT5G20510 69.4 3.1e-62 235.3
Cpe01g00130 CCT,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.4e-53 205.3
Cpe08g01225 CCT,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 5.5e-51 198.0
Cpe03g00051 CCT,ECH 4 155 Alfin-like Transcription Factor Family AT5G20510 60.9 2.3e-49 192.6
Cpe01g00797 CST 4 132 Alfin-like Transcription Factor Family AT5G20510 68.7 5.3e-46 181.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49130 PF12165 Alfin 4.10E-63 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00051 Cpe_Chr03 FPKM 31.629873 40.058868 29.627979 28.474178 28.497578 23.842897 30.124025 35.294182 38.531921 38.111732