Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00081 ATGGCGCCTCCGGAAGTTTCCCAATCCCACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGGGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGCTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGCTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATTGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGATCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCATCAACTCACCCATCAGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTTTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAATGTGCCCACGTAG 696 45.98 MAPPEVSQSHIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPGVGVASDSRRVSSVSAHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTDQSNESNNASSTTAVAASTHPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 432033 435371 + Cp4.1LG03g02730.1 Cpe03g00081 465798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00081 231 Pfam RING-variant domain 107 158 IPR011016 GO:0008270
Cpe03g00081 231 ProSiteProfiles Zinc finger RING-CH-type profile. 99 165 IPR011016 GO:0008270
Cpe03g00081 231 MobiDBLite consensus disorder prediction 1 25 - -
Cpe03g00081 231 PANTHER ZINC FINGER, RING-CH-TYPE 7 230 - -
Cpe03g00081 231 PANTHER OS01G0850200 PROTEIN 7 230 - -
Cpe03g00081 231 SUPERFAMILY RING/U-box 104 161 - -
Cpe03g00081 231 SMART ringv_2 106 159 IPR011016 GO:0008270
Cpe03g00081 231 CDD RING_CH-C4HC3_MARCH 107 159 - -
Cpe03g00081 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 167 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00081 Cpe08g01193 CCT
Cpe03g00081 Cpe08g01193 ECH
Cpe03g00081 Cpe19g00305 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00081 Cpe-Chr3:432033 Cpe20g00846 Cpe-Chr20:7608385 1.96E-47 dispersed
Cpe01g02534 Cpe-Chr1:20756211 Cpe03g00081 Cpe-Chr3:432033 1.03E-71 wgd
Cpe13g01080 Cpe-Chr13:8732164 Cpe03g00081 Cpe-Chr3:432033 4.49E-49 wgd
Cpe19g00305 Cpe-Chr19:2654666 Cpe03g00081 Cpe-Chr3:432033 1.81E-61 wgd
Cpe03g00081 Cpe-Chr3:432033 Cpe08g01193 Cpe-Chr8:8780053 2.39E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00081 - - csv:101218915 379.022