Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00081 | ATGGCGCCTCCGGAAGTTTCCCAATCCCACATTGATTTGGAACAGGGGAATCATCGGCGGTCTGTTAGTGGTAGTGATTTGAGCGCCGATTGTAGCGTCTATTTCTCTGACGCCGATGAGGGTTCGTGTCCCTCTCAGTTTTTGTCGACCAACGGTGGTTCTTATGATGAGTTTAGGTTTTCTTTTGTTTCTCAGCCGGGGGTTGGGGTTGCTTCGGATTCTCGCCGAGTTTCGTCGGTTTCGGCTCATTCGGTGGAGGTTGAAAATGAAAATGGGATTTCTGAAATCAAGGTGCATTTGGCTAAAGTAGAGAGGGATTGCAGGATTTGTCATTTGGGTTTGGAGAGTAATAGCCAAGAGTCTGGAATCCCAATCGAATTGGGCTGTTCGTGCAAGGATGATTTGGCTGTTGCTCACAAGCATTGTGCTGAAACCTGGTTCAAAATTAAAGGAAACAAGACATGTGAGATTTGCCATTCCATTGCACAAAACATTGTCGAACCAAATGAGGTTGAGTTAACAGATCAGTCTAATGAATCCAACAACGCCTCCTCAACAACTGCAGTTGCTGCATCAACTCACCCATCAGACACCCAAAGCTTCTGGCGTGGGCACCGGTTTCTGAATTTTTTGCTTGCTTGTATGGTATTTGCTTTTGTTGTATCTTGGCTGTTTCACTTCAATGTGCCCACGTAG | 696 | 45.98 | MAPPEVSQSHIDLEQGNHRRSVSGSDLSADCSVYFSDADEGSCPSQFLSTNGGSYDEFRFSFVSQPGVGVASDSRRVSSVSAHSVEVENENGISEIKVHLAKVERDCRICHLGLESNSQESGIPIELGCSCKDDLAVAHKHCAETWFKIKGNKTCEICHSIAQNIVEPNEVELTDQSNESNNASSTTAVAASTHPSDTQSFWRGHRFLNFLLACMVFAFVVSWLFHFNVPT | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 432033 | 435371 | + | Cp4.1LG03g02730.1 | Cpe03g00081 | 465798 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00081 | 231 | Pfam | RING-variant domain | 107 | 158 | IPR011016 | GO:0008270 | |
Cpe03g00081 | 231 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 99 | 165 | IPR011016 | GO:0008270 | |
Cpe03g00081 | 231 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cpe03g00081 | 231 | PANTHER | ZINC FINGER, RING-CH-TYPE | 7 | 230 | - | - | |
Cpe03g00081 | 231 | PANTHER | OS01G0850200 PROTEIN | 7 | 230 | - | - | |
Cpe03g00081 | 231 | SUPERFAMILY | RING/U-box | 104 | 161 | - | - | |
Cpe03g00081 | 231 | SMART | ringv_2 | 106 | 159 | IPR011016 | GO:0008270 | |
Cpe03g00081 | 231 | CDD | RING_CH-C4HC3_MARCH | 107 | 159 | - | - | |
Cpe03g00081 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 167 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe03g00081 | Cpe08g01193 | CCT | |
Cpe03g00081 | Cpe08g01193 | ECH | |
Cpe03g00081 | Cpe19g00305 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00081 | Cpe-Chr3:432033 | Cpe20g00846 | Cpe-Chr20:7608385 | 1.96E-47 | dispersed | |
Cpe01g02534 | Cpe-Chr1:20756211 | Cpe03g00081 | Cpe-Chr3:432033 | 1.03E-71 | wgd | |
Cpe13g01080 | Cpe-Chr13:8732164 | Cpe03g00081 | Cpe-Chr3:432033 | 4.49E-49 | wgd | |
Cpe19g00305 | Cpe-Chr19:2654666 | Cpe03g00081 | Cpe-Chr3:432033 | 1.81E-61 | wgd | |
Cpe03g00081 | Cpe-Chr3:432033 | Cpe08g01193 | Cpe-Chr8:8780053 | 2.39E-150 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00081 | - | - | csv:101218915 | 379.022 |