Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00089 ATGGCTGAAGGTATTGAATCCTTCGACCATGTCCCTCAACAAAGCCGGCGCGACAAGCTCCGGGAACATTCCGACCACCGTTCCACTTTCCTCCCTTTCTACGATGACCCTTCATCCTTAATCTCCCCCCCATCCGACTCCACCCATCGTTTCCAATTCCACCACCACCCTTTCTTCGACCCCCAAATCCAATCCTCCCTCTTACCCGACATCCATCATCAAAACCATTGCTTCACCTCCGAGCCTCTCTCCCTCTCCCTCTCCTCTCAGCCCTTCCTCGCCGCCCCTATTCCCGCCGCCCTCCCTCTCGGCCCTTTCACCGGCTACGCTTCCATTTTAAAAGGCTCCAGGTTTTTGAAGCCTGCCCACCAGTTGCTAGAGGAGCTTTGCGATGTGGTTGGCCTTCACCCCGCCTTCCCCTCCTCTTCCTCCCTCAACTCTCCCCCTTCTCCTTCTCCCTCTGCTTTCATGGATGATCCTTCCTCTCACTCTCCAATTCTCGACCACCATCCCCTTGCTTCCTCTCACTCTGCCCCTCCTATCAAATCCACCCTTCTCTCAATGCTCGATGAGATTTACAGGAAATATAAGCAGTACTATCAACAAGTTCAGGAAGTAATGACATCTTTTGAGTACATCTCTGGCCTTGGGAATGCAGCGCCCTATGCAAACCAGGCTATTAAAGTGATGTACAAGCATTTCAAGTGCTTGAAAAATGCAATTCTTGACCAACTTCAATTCAATAAGAAGACTCGTGGTGACTACGGTCAAAGATCCGGTCAGAACCCGGGATTTCTCGACCATCAGCCTGTTTGGCGACCGCAACGGGGGCTTCCCGAACGAGCAGTCACCGTTCTTCGTGCTTGGTTGTTCGAACATTTTTTGCATCCTTATCCTTCTGATACAGACAAGCTTATGTTGGCAAAACAGACTGGTCTGTCTCGTAGTCAGGTATCTAACTGGTTCATTAATGCAAGAGTTAGGCTTTGGAAGCCAATGGTTGAAGAAATATACATGCTTGAAACCAAACAAACGCAGAAGAATTTGCACAGAGATGATCGCGACCCCAACAGGCTAAACGATCACCATCCAACCAACTTGCTCGCCATCGATAACCCCTCTAAATCCGCTCAAGAAATTCAAGATACTCCTACCAAACGTACCCGAAACAAACCACACGACGTGCTAATGGGAAATCACGACGAGCCCTTGAACGTGTCTTACAACGTGTCGAGCCATCCCCATGTAGGCTCAAATGCAAATATGGGGGGGAACAACAATGGAGTTTCGCTAACTCTTGGTCTTCACCAGAACAACAACAACGGCATTGGTGGTGGCTTTTCTGAACCCTTTCCTGTTGGGTTCCCCGTTGCGGCGACTCGACGTTTCGGGCTGGGAATTCAAGGCAATAGTGATGGGTATGTAATGGGAGGACATTTTGGTAGAGATGTTGTTGGAGGGCAGCTGTTACATGACTTTGTAGGGTGA 1488 49.8 MAEGIESFDHVPQQSRRDKLREHSDHRSTFLPFYDDPSSLISPPSDSTHRFQFHHHPFFDPQIQSSLLPDIHHQNHCFTSEPLSLSLSSQPFLAAPIPAALPLGPFTGYASILKGSRFLKPAHQLLEELCDVVGLHPAFPSSSSLNSPPSPSPSAFMDDPSSHSPILDHHPLASSHSAPPIKSTLLSMLDEIYRKYKQYYQQVQEVMTSFEYISGLGNAAPYANQAIKVMYKHFKCLKNAILDQLQFNKKTRGDYGQRSGQNPGFLDHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPSDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIYMLETKQTQKNLHRDDRDPNRLNDHHPTNLLAIDNPSKSAQEIQDTPTKRTRNKPHDVLMGNHDEPLNVSYNVSSHPHVGSNANMGGNNNGVSLTLGLHQNNNNGIGGGFSEPFPVGFPVAATRRFGLGIQGNSDGYVMGGHFGRDVVGGQLLHDFVG 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 464228 468610 + Cp4.1LG03g02750.1 Cpe03g00089 465806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00089 495 MobiDBLite consensus disorder prediction 346 370 - -
Cpe03g00089 495 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 442 - -
Cpe03g00089 495 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Cpe03g00089 495 MobiDBLite consensus disorder prediction 1 23 - -
Cpe03g00089 495 SMART prehox3 107 243 IPR006563 -
Cpe03g00089 495 Gene3D - 275 337 - -
Cpe03g00089 495 SUPERFAMILY Homeodomain-like 274 339 IPR009057 -
Cpe03g00089 495 Pfam Associated with HOX 112 241 IPR006563 -
Cpe03g00089 495 CDD homeodomain 272 333 IPR001356 GO:0003677
Cpe03g00089 495 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 64 442 - -
Cpe03g00089 495 MobiDBLite consensus disorder prediction 376 395 - -
Cpe03g00089 495 SMART HOX_1 272 336 IPR001356 GO:0003677
Cpe03g00089 495 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Cpe03g00089 495 MobiDBLite consensus disorder prediction 346 361 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00089 Cpe10g00915 CCT
Cpe03g00089 Cpe08g01183 CCT
Cpe03g00089 Cpe08g01183 ECH
Cpe03g00089 Cpe10g00915 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01326 Cpe-Chr2:11751697 Cpe03g00089 Cpe-Chr3:464228 4.93E-64 dispersed
Cpe03g00089 Cpe-Chr3:464228 Cpe19g00315 Cpe-Chr19:2732723 2.51E-90 dispersed
Cpe10g00915 Cpe-Chr10:5106944 Cpe03g00089 Cpe-Chr3:464228 5.28E-72 wgd
Cpe03g00089 Cpe-Chr3:464228 Cpe08g01183 Cpe-Chr8:8741990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49131 PF07526 POX 3.50E-30 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00089 - - cmax:111481510 919.457