Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00113 ATGGATCCACGCTTTACACGACAAGCTGGTTTCACGAATGAAATTCTTATAGGTAATCGCCCCTTTGCGGTTCAAGCACAAGAGAATGCTCTTGGAAGGCCCATGTTTCAGGATACCGTTTTGAGTCATAACTTTGAAGAATTTAATTGCTTTCCTCTCGATCCATCGCCGAATAACATGGCCTCAAGTTCCAGTATTAGAACCTCATCTTCTAATGAGGCGAGCCATGAGGAAGATTATCTGGAAGATTACGATTTCTCTGATGCTGTTTTGAGATTCATAAATCAGATTCTGATGGAAGAAGATATGGAGGACAAGACTTGCATGCTTCAAGATTCTTTGGATCTTCAAGCTGCTGAGAAATCATTCTACGAGGTCCTTGGAAAAAAGTATCCTCCTTCTCCAGAACCGAATAGATCTCTGGCCAATCAATACAGTGATAGCTTCTATGAAGAACTTTGTGGAGATAGTATTAATTGCCTGAATAGTTATCGTAATACTTTTTATTATGGTGATGATAACCCTTTTCAAACTCTGGGTGAGGATGTATTTCAAATCAGAAGCACTTTAGATGATATCATTTCTCCATCATCTCATAGCTCCTCGAATAGTATTATTAGTGGGGCTGATGGGTGGGTGGACTTCTCGAATAATACAATTTTAGTCCCTGAGCCTAATGACAGAAGCCAATCCATTTGGCAGTTTCAAAAAGGGTTTGAAGAGGCAAGCAAATTTTTACCTGGTGAAAACAACTTGTGTCTTGATTTTGAGGTAAATGAGCCAGCAACTCATGGTCCGGAGGAGGAAACGAGCGAGATATATTTGAAGGCAGGAAGAACGGATCAGAAGAGTGTTTTGTCACTTGAATCACGTGGAAGAAAGAATCCTCATGATGAGGATGGAGATTTGGAAGAAGAGAGATGCCGCAAGCAAGCAGCTCTATTTACAGAGTCAACCTTGCGATCTAAGATGTTTGATATTGTGTTGCTTTGTAGTGCAGGGGAGGGGCGTGAACGGTTAGTTTCATTTCGACAGGAATTACAGAATGCTAAAATCAAAAGCATGCTGCAGAATGGGCAACTAAAAGAGTTTAGAGGTGGGAGGGGTCGTCGGAAGAAGCATAGTGGGAAAAAGGAGGTTGTGGATTTGAGAACTCTTCTAATTAGCTGTGCTCAAGCTATTGCAGCTGATGACCATAGGAATGCTAGTGAGCTTCTAAAGAAGATCAGGCAACATGCTTCTCCTTTTGGGGATGGAAATCAGAGGTTGGCTAGTTGTTTTGCTGATGGTCTGGAGGCACGCTTGGCAGGTACTGGTAGCCAGATTTACAAAGGTCTAGTTAATAAAAGAACATCTGCTGCCGATGAATTGAAAGCTTACCACTTGTACCTTGCTGCATGCCCATTTAGAAAGATCTCTAATTTTACTTCAAACAGGACTATAATGATTGCTGCAGAGAATGCAACGAAGCTTCATGTCATAGATTTTGGTATCCTTTACGGTTTCCAGTGGCCTACTTTAATCCAGAGATTGTCATGGAGAGAAGGTGGACCTCCAAAGCTTCGAATTACTGGAATAGAATTTCCCCAGCCTGGATTTCGTCCTGCGGAGAGAGTTGAGGAGACAGGTCGTCGCTTGGCGGCCTATGCAGAGAGTTTCAACGTGCCATTTGAGTATAATGCTATAGCAAAAAAATGGGAAAATATTTCTGTGGAAGAACTCAATATCCATCAAGATGAGTTCCTCGTTGTGAACTGTTTGTATCGAGCAAAAAATTTGTCTGATGAAAGTGTTGCCACAGAGAGTGCCAGAAGTTCTGTTTTTAGATTGATACACAAAATTAAACCCAACTTATTCATCAGTGGCGTTGTCAATGGGGCATACAATGCACCTTTCTTCGTTACCCGATTTCGAGAGGCATTGTTTCACTTTTCTGCTATCTTTGATATGCTTGAAACTGTTGTACCTCGTGAGGATTGGGAGAGAATGCTGTTGGAGAGAGAGATCTTTGGCAGGGAGGCTTTAAATGTTATAGCATGTGAGGGATGGGAGAGAGTGGAAAGACCAGAAACATACAAGCAGTGGCAATTTTGGATCATGAGGGCTGGATTTGTGCAACTGCCATTTTATCCTGAGATTTTTGAGAGAGCAGTTGAAAAGGTGCGGTCAAGTTACCACAGAGATTTTTTGATTGATGAAGATAGTAGATGGATACTGCAGGGATGGAAAGGTCGAATTATATATGCCATCTCTGCATGGAAACCAGCTGCAGAGTAA 2277 41.85 MDPRFTRQAGFTNEILIGNRPFAVQAQENALGRPMFQDTVLSHNFEEFNCFPLDPSPNNMASSSSIRTSSSNEASHEEDYLEDYDFSDAVLRFINQILMEEDMEDKTCMLQDSLDLQAAEKSFYEVLGKKYPPSPEPNRSLANQYSDSFYEELCGDSINCLNSYRNTFYYGDDNPFQTLGEDVFQIRSTLDDIISPSSHSSSNSIISGADGWVDFSNNTILVPEPNDRSQSIWQFQKGFEEASKFLPGENNLCLDFEVNEPATHGPEEETSEIYLKAGRTDQKSVLSLESRGRKNPHDEDGDLEEERCRKQAALFTESTLRSKMFDIVLLCSAGEGRERLVSFRQELQNAKIKSMLQNGQLKEFRGGRGRRKKHSGKKEVVDLRTLLISCAQAIAADDHRNASELLKKIRQHASPFGDGNQRLASCFADGLEARLAGTGSQIYKGLVNKRTSAADELKAYHLYLAACPFRKISNFTSNRTIMIAAENATKLHVIDFGILYGFQWPTLIQRLSWREGGPPKLRITGIEFPQPGFRPAERVEETGRRLAAYAESFNVPFEYNAIAKKWENISVEELNIHQDEFLVVNCLYRAKNLSDESVATESARSSVFRLIHKIKPNLFISGVVNGAYNAPFFVTRFREALFHFSAIFDMLETVVPREDWERMLLEREIFGREALNVIACEGWERVERPETYKQWQFWIMRAGFVQLPFYPEIFERAVEKVRSSYHRDFLIDEDSRWILQGWKGRIIYAISAWKPAAE 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 570245 572521 - Cp4.1LG03g02410.1 Cpe03g00113 465830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00113 758 MobiDBLite consensus disorder prediction 286 305 - -
Cpe03g00113 758 ProSiteProfiles GRAS family profile. 374 754 IPR005202 -
Cpe03g00113 758 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 755 IPR005202 -
Cpe03g00113 758 Pfam GRAS domain family 383 754 IPR005202 -
Cpe03g00113 758 PANTHER SCARECROW-LIKE PROTEIN 9 35 755 - -
Cpe03g00113 758 MobiDBLite consensus disorder prediction 284 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00113 Cpe08g01167 CCT
Cpe03g00113 Cpe08g01167 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00113 Cpe-Chr3:570245 Cpe16g00391 Cpe-Chr16:5492187 1.22E-69 dispersed
Cpe16g00623 Cpe-Chr16:6751531 Cpe03g00113 Cpe-Chr3:570245 0 wgd
Cpe20g00829 Cpe-Chr20:7491328 Cpe03g00113 Cpe-Chr3:570245 1.48E-129 wgd
Cpe03g00113 Cpe-Chr3:570245 Cpe05g00928 Cpe-Chr5:6099157 0 wgd
Cpe03g00113 Cpe-Chr3:570245 Cpe08g01167 Cpe-Chr8:8658812 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49133 PF03514 GRAS 5.30E-115 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00113 - - csv:101205887 1266.52