Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00132 ATGGGAGAAGAAGCAGCTGGGTTGGCTGCAGTTACAAATGAGCCGTTGGGGAAAGAGAGCGCTCCGAGTACCGAATTGAAGCGGGACCATCAGTGTCTTGATGAAGATACGGAACCCGAGGCTTTTCACAACAAGAAGCAGGCTAAAGAAGTGTCGAATGAAGATGTTCGTTCAGAAGTTTCGAATCCCGTAATTTCTCCGAAAGGGAATCATTTCCAAGATATTACCAGCCAACCTGAGGAGCAAGAAAATACCAACCAAGTTGAGCGTGGGGACCTTACCTCGGCTTGTTCGGGTAATTCAAGCTCGGAGGACATCTCTAGTAATGGAGTTCGTTGCCAGAATGACACGTCTCGAAATGACGTTGATATGTGTGATGTTGATGAGGTCTCTCGGTTTGTGATTGAAATACCCAAGCATGCTAGTTCAACTGGAATTAGAAAAATTACGTTCAAGTTCAGCAAAAAAAAGGACAAAATTGACGCATCCATGTCAGCAGACAAAGTTCGTTCATATGGGAACTTCGACAAGGACTGTAAACCAGAACCTTCACTGGTGGACGATGCTTGTACGGAGACATCTGCACATAGCTGGGAAGGCATTGCTGAGAGCAGCAGGCATCCTTTAGGTTCAAATAAAATGGAATTGAAAATGTCGAAGAAGGTTTTACCAAACAATTACCCGTCGAATGTTAAAAAGCTACTGTCGACTGGTATACTTGACGGAGCTCGAGTCAAGTATATATCTACGACAAGCGAGATGAAGCTACATGGTATTATAAATGGCGGAGGTTATATGTGCGGATGTTCAATATGCAATTTTACAACTATCCTCAGTGCTTATGAGTTTGAGCAGCACGCTGGTTTCAAGACTAGACATCCAAATAATCATATATACCTGGAGAATGGGAGGCCAATTTATAGTGTCATACAGGAAATTAAGAGTGCACCTCTTAGCATATTAGATGAAGTGATTAAGGAAGTAGCGGGTTCATGTATTAACGTGGATTCATTTGAGGATTGGAAAGCAAATTTCCACCAGAACAGTGCAATTATTGAAGTGGAAAATGATGATGTGAAGGTTCCTAAATTGTCACATCCCATTGACAGGCCAATCCCTAATTTATCCAACCCAGTCATGCAACAGAAGAAAACGGCAGAAAAAGGCACAAAAAGAAGGGATAATGATCTCCACAGGCTACTTTTCATGCCAAATGGGCTTCCAGATGGGGCTGAGCTGGCATACTTCGTCAAAGGACAGAGAATACTTGTAGGCTACAAGCAAGGAAATGGCATACTCTGTAGTCACTGTAATCGAGAGATCAGCCCTTCACAGTTTGAAGCCCATGCAGGGATGGCTGCCAGACGTCAGCCCTACCGCCACATTTATACTACAAATGGACTTACGCTTCATGATATAGCCATTTCCTTGGCTAGTGGGCAAAAACTTACCACAGGAGATAGTGATGATATGTGCGCTACATGTGGTAATGGAGGGGATTTGATTTTCTGTGATCGCTGCCCTCGAGCTTTCCATACAGGCTGCCTGCATCTACAGAATGTTCCTGAAGGAGTTTGGTCTTGCCCAAACTGTAGAGATAAAGTGGGTTCCAATTTGAAGGCTCCTTCCGGAGGTTCTTTGAGTTTTTCAAAACCAATTGTATTTAGGTTGACACGAGTTGTTAAAGCACCTGAATATGAAATTGGTGGTTGTGTTGTTTGCAGGCGACATGATTTCAGTGCCGCTAAATTTGATGATCGAACTGAACTTCCCAAGGACAAGTGGTTCTGCTGTGACGAGTGCAGTAATATCCATGTGGCTTTTCAGAATACAGTTTTGAACGGGGCACAGATCATTCCAGATTCCTTATCAGATTTAATAATTAGGAAGCATGTTGGAAAAGGATTACCAGTTGATGGAGCTCTTAATGATGTTCGGTGGCAAATTTTAAGTGGAAAAAGTCGCTTCCCAGAAGATCTTCCATTTCTTTCGAGGGCAACTGCTATTTTTCGGGAATGTTTTGATCCTATTGTTGCAAAATCAGGTCGTGATCTGATTCCTGTTATGGTTTATGGGAGAAATATATCTGGGCAAGAGTTTGGAGGAATGTATTGCGTTGTTTTAATTGTGAGATCGATAGTTGTATCGGCTGGTCTTCTTAGGATATTTGGTCGTGAAGTTGCTGAGCTTCCTATTGTTGCCACAAGTCGAGAACATCAGGGCAGGGGTTATTTCCAAGTATTGTTTTCCTGTATAGAGCGGCTACTTTCTTCCCTGAATGTGCAAAACCTTGTACTCCCTGCAGCCGAGGATGCTGAATCAATTTGGACTAAGAAATTGGGCTTCAGAAAGATGAGTGAAGAACAATTGATGAAGTATATGAGGGAGGTCCAGCTGACGATCTTCAACGGAACATCGATGCTAGAGAAGGTGGTCCAGCAGTCGACGTTGACATGA 2457 43.14 MGEEAAGLAAVTNEPLGKESAPSTELKRDHQCLDEDTEPEAFHNKKQAKEVSNEDVRSEVSNPVISPKGNHFQDITSQPEEQENTNQVERGDLTSACSGNSSSEDISSNGVRCQNDTSRNDVDMCDVDEVSRFVIEIPKHASSTGIRKITFKFSKKKDKIDASMSADKVRSYGNFDKDCKPEPSLVDDACTETSAHSWEGIAESSRHPLGSNKMELKMSKKVLPNNYPSNVKKLLSTGILDGARVKYISTTSEMKLHGIINGGGYMCGCSICNFTTILSAYEFEQHAGFKTRHPNNHIYLENGRPIYSVIQEIKSAPLSILDEVIKEVAGSCINVDSFEDWKANFHQNSAIIEVENDDVKVPKLSHPIDRPIPNLSNPVMQQKKTAEKGTKRRDNDLHRLLFMPNGLPDGAELAYFVKGQRILVGYKQGNGILCSHCNREISPSQFEAHAGMAARRQPYRHIYTTNGLTLHDIAISLASGQKLTTGDSDDMCATCGNGGDLIFCDRCPRAFHTGCLHLQNVPEGVWSCPNCRDKVGSNLKAPSGGSLSFSKPIVFRLTRVVKAPEYEIGGCVVCRRHDFSAAKFDDRTELPKDKWFCCDECSNIHVAFQNTVLNGAQIIPDSLSDLIIRKHVGKGLPVDGALNDVRWQILSGKSRFPEDLPFLSRATAIFRECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVVLIVRSIVVSAGLLRIFGREVAELPIVATSREHQGRGYFQVLFSCIERLLSSLNVQNLVLPAAEDAESIWTKKLGFRKMSEEQLMKYMREVQLTIFNGTSMLEKVVQQSTLT 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 661351 669005 + Cp4.1LG03g02380.1 Cpe03g00132 465849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00132 818 Pfam Tify domain binding domain 258 312 IPR032308 -
Cpe03g00132 818 Pfam Tify domain binding domain 425 474 IPR032308 -
Cpe03g00132 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 554 IPR013083 -
Cpe03g00132 818 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 696 791 IPR016181 -
Cpe03g00132 818 SMART PHD_3 491 532 IPR001965 -
Cpe03g00132 818 ProSiteProfiles Zinc finger PHD-type profile. 489 534 IPR019787 -
Cpe03g00132 818 ProSitePatterns Zinc finger PHD-type signature. 492 531 IPR019786 -
Cpe03g00132 818 Pfam PHD-finger 491 533 IPR019787 -
Cpe03g00132 818 MobiDBLite consensus disorder prediction 1 114 - -
Cpe03g00132 818 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 35 355 - -
Cpe03g00132 818 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 368 814 - -
Cpe03g00132 818 SUPERFAMILY FYVE/PHD zinc finger 479 534 IPR011011 -
Cpe03g00132 818 MobiDBLite consensus disorder prediction 57 114 - -
Cpe03g00132 818 MobiDBLite consensus disorder prediction 21 56 - -
Cpe03g00132 818 MobiDBLite consensus disorder prediction 365 392 - -
Cpe03g00132 818 Gene3D - 653 812 - -
Cpe03g00132 818 PANTHER AUTOIMMUNE REGULATOR 35 355 - -
Cpe03g00132 818 PANTHER AUTOIMMUNE REGULATOR 368 814 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00132 - - - cmax:111481523 1584.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00132 Cpe08g01153 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00132 Cpe-Chr3:661351 Cpe09g00545 Cpe-Chr9:3661149 2.87E-171 dispersed
Cpe01g00193 Cpe-Chr1:1091374 Cpe03g00132 Cpe-Chr3:661351 4.17E-43 wgd
Cpe01g01104 Cpe-Chr1:6521592 Cpe03g00132 Cpe-Chr3:661351 1.43E-38 wgd
Cpe16g00590 Cpe-Chr16:6625512 Cpe03g00132 Cpe-Chr3:661351 3.38E-43 wgd
Cpe03g00132 Cpe-Chr3:661351 Cpe05g00901 Cpe-Chr5:5948305 5.67E-41 wgd
Cpe03g00132 Cpe-Chr3:661351 Cpe08g01153 Cpe-Chr8:8575977 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g694 . . . . Bpe04g01561 . Bma04g01614 . Cmo06g00314 Cmo14g00154 . . . . . . Cpe08g01153 . . . . . . . . . . . . . . Cone3ag0322 . Cone13ag1327 Cone19ag1312 . . . Cme04g02602 . . Bda03g01749 Bda05g01208 . . . . Sed02g0695 . . Cma06g00312 . Car06g00270 Car14g00139 Cpe03g00132 . Bhi11g02231 Tan08g1981 Cmetu08g1975 . . . . Cla10g01990 Cam10g2058 Cec10g2099 Cco10g2081 Clacu10g2063 Cmu10g2811 Cre10g2204 Lsi03g02089 Csa03g03200 Chy04g02130 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g01153 CCT 18 847 PHD Transcription Factor Family AT3G53680 52.7 2.4e-247 852.4
Cpe03g00132 CCT 25 812 PHD Transcription Factor Family AT3G53680 51.6 2.1e-232 802.7
Cpe01g00193 CCT,ECH 483 609 PHD Transcription Factor Family AT3G53680 55.1 5.2e-37 153.7
Cpe16g00590 . 312 450 PHD Transcription Factor Family AT3G53680 51.8 5.2e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005462 1 2 0 1 1 1 2 1 1 1 1 1 3 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49136 PF16135 TDBD 2.80E-12 No_clan Cpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00132 Cpe_Chr03 FPKM 24.147146 22.04487 18.240812 20.950087 19.667137 15.655971 19.872952 25.683819 25.320644 31.055271