Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g00147 | ATGGTTAAACCATGCTGGAAGCCTCACGATGATGGTGATTCAAACGGACGAGTTGATGGGTTGTTGTGGTCTAAGGATCTGGGGCATCATGTTTATGGGCAATTCTCCATGGCAGTAATCCAAGCTAATAATGTGGTGGAAGATCAAAGCCAGCTTGAATCTGGGGCTTTGAGTATGACCAACCCAGGTCCGCAGGGGACCTTTGTCGGAGTTTATGACGGCCATGGCGGAACCGAAGCTTCACGGTTTGTCAACGACAATCTCTTCAGCAATCTCAAAAGATATGTATCTTTGCACCAAAACATATCAGAAAACGCTATCAGGAAGGCTTTTGCAGCAACAGAAGAGGAGTTTCTCTCTCTTGTCCAGAAACAGTGGCTTAATGAACCCAAGATTGCATCTGCTGGATCATGTTGTTTGGTAGGGATCATATGCAATGGACAGCTTTATATTGCCAACGCAGGCGATTCTCGAGCAGTGCTTGGGAGAACCGAGAGAGCCACTAGAGAAGTCATTGCCATTCAATTGTCCACAGAACACAATGCAAGCATAGAATCAGTGAGAGATGAACTACGGATGGTTCATCCAGAAGATCCTCAGATTGTGATCCTAAAGCACAATGTGTGGCGTGTTAAAGGTATCATACAGGTAATTTTCCTGGAAATTCTCTTGAAGTTTGAGAGGGTAGCTGTTGATTGTTAA | 702 | 44.87 | MVKPCWKPHDDGDSNGRVDGLLWSKDLGHHVYGQFSMAVIQANNVVEDQSQLESGALSMTNPGPQGTFVGVYDGHGGTEASRFVNDNLFSNLKRYVSLHQNISENAIRKAFAATEEEFLSLVQKQWLNEPKIASAGSCCLVGIICNGQLYIANAGDSRAVLGRTERATREVIAIQLSTEHNASIESVRDELRMVHPEDPQIVILKHNVWRVKGIIQVIFLEILLKFERVAVDC | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 742758 | 745045 | + | Cp4.1LG03g02180.1 | Cpe03g00147 | 465864 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g00147 | 233 | Pfam | Protein phosphatase 2C | 64 | 185 | IPR001932 | - | |
| Cpe03g00147 | 233 | ProSitePatterns | PPM-type phosphatase domain signature. | 68 | 76 | IPR000222 | GO:0043169 | |
| Cpe03g00147 | 233 | PANTHER | ALPHABET, ISOFORM E-RELATED | 3 | 217 | - | - | |
| Cpe03g00147 | 233 | SUPERFAMILY | PP2C-like | 32 | 216 | IPR036457 | - | |
| Cpe03g00147 | 233 | ProSiteProfiles | PPM-type phosphatase domain profile. | 34 | 233 | IPR001932 | - | |
| Cpe03g00147 | 233 | SMART | PP2C_4 | 12 | 230 | IPR001932 | - | |
| Cpe03g00147 | 233 | CDD | PP2Cc | 32 | 217 | IPR001932 | - | |
| Cpe03g00147 | 233 | PANTHER | PROTEIN PHOSPHATASE 2C 67-RELATED | 3 | 217 | - | - | |
| Cpe03g00147 | 233 | Gene3D | - | 22 | 221 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00147 | Cpe-Chr3:742758 | Cpe10g00688 | Cpe-Chr10:3957063 | 9.64E-106 | dispersed | |
| Cpe11g00098 | Cpe-Chr11:526743 | Cpe03g00147 | Cpe-Chr3:742758 | 2.06E-81 | dispersed | |
| Cpe01g00222 | Cpe-Chr1:1248672 | Cpe03g00147 | Cpe-Chr3:742758 | 1.87E-106 | wgd | |
| Cpe01g01128 | Cpe-Chr1:6676303 | Cpe03g00147 | Cpe-Chr3:742758 | 3.72E-106 | wgd | |
| Cpe03g00147 | Cpe-Chr3:742758 | Cpe08g01134 | Cpe-Chr8:8492012 | 1.18E-158 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g00147 | K01102 | - | csv:101210750 | 429.483 |