Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00153 ATGCTGGATCTTAACCTCCAAGTTGTTTCCTCTGATTCGGTTGAGATGGTTACTGAGAGGCTTTTCCAGTTTCCGGCGATCAGAATGGAAAGCGCCGGTAGCTTTAACGGCGATCTTTCTGCCAGCACTACCGGCGACGAGGACTCATCTTCCAACGCTGATGAAGCTTTCCCGTTCGCCTTCGGTAAGGACTGCGCGGTTCAGGAAAACTTAACGGCCAAGTCACTCTGTATTTCCGATAACCACCGCGATCAGACGATGGAGCTTTTTCCATTAACAGGCGGGTTATCTTCTGGTTCGAGTTCTCAGAAGCAGTGGCTGGAGGTTTCTCCGCCGGAATTTCACTATTGGGGGGGAGCGCCGGAGCGGCGAATAACAGCACCGCCGGGGCAACAACAGCATCAGCCGATGAGGAAGAATCGGCGAGGTCCAAGGTCTCGAAGTTCGCAGTATCGCGGCGTTACCTTTTATCGAAGAACAGGAAGATGGGAATCGCATATTTGGGACTGCGGGAAACAAGTTTATCTGGGTGGTTTCGATACTGCACACGCGGCTGCTAGGGCGTATGATCGGGCGGCGATCAAGTTTCGAGGGGTCGATGCAGATATCAATTTCAATGTCAGTGATTATGATGAAGATATTAAGCAGGTGGGATTGGCTAAGTTAATACTCATTACTGTCAGAACTTCAAACTCTTTCTCTAACGCCATTGATGAAGAGCTTTACTCTTGGCTGCCATTAATGTCCCAGATGAGTAATTTTACCAAGGAAGAGTTTGTTCATATTCTTCGCCGCCATAGCACTGGATTTTCGAGGGGGAGCTCCAAGTACAGAGGGGTCACTCTGCATAAATGTGGGCGATGGGAGGCTCGGATGGGCCAGTTCTTGGGCAAGAAGTACATATATCTTGGTCTCTTTGATAGTGAGATTGAGGCTGCAAGAGCATATGACAAAGCTGCCTTGAAATGCAATGGTAAGGAGGCTGTCACAAACTTTGAACCCAGTTCTTATGTTGCAGAGATGGCTTCTGAGGCGGCTGGCACAGCAGGTTTGCTCCTTCTCTGGCTATACAATTTGGTCACTCGATCGATCGAGTTAACATTCGGTATCGAAAACTGTGTTGATTATGTCCCATATGCAGAGAACAACCAGATTCTTGATCTGAACTTGGGAATTGCTCCCCCAAATCTCTGTGAGGCTCAAAGTGAGAGCATTGCCATGTTTGAGAGAAGAGCTATGCCTGAGAACTCTGTTTCAGCAGCAATTAGATCATCCCATTCACAGCCGTATAGCTTTGCAGTGCCTTCCAATTACCATTCTCCTTGGAGTGTTTCAAACTCCAGTTTCTTTCCCAACTCAAGGGAAAGAGCAACAGAGATGAGGATGGGGGTTGGGTCATGGGAGTGGCAAATCCATGGCCACCCAAGTGGAACAACCTCCGTGCCACTCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCTTCTTCTTCTTCGACTGCCATTCCATCAGCTTCATCTGGTGTTGGTGAAACCCATTTCCCAGCAATCTTCTAC 1554 48.58 MLDLNLQVVSSDSVEMVTERLFQFPAIRMESAGSFNGDLSASTTGDEDSSSNADEAFPFAFGKDCAVQENLTAKSLCISDNHRDQTMELFPLTGGLSSGSSSQKQWLEVSPPEFHYWGGAPERRITAPPGQQQHQPMRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQVGLAKLILITVRTSNSFSNAIDEELYSWLPLMSQMSNFTKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAALKCNGKEAVTNFEPSSYVAEMASEAAGTAGLLLLWLYNLVTRSIELTFGIENCVDYVPYAENNQILDLNLGIAPPNLCEAQSESIAMFERRAMPENSVSAAIRSSHSQPYSFAVPSNYHSPWSVSNSSFFPNSRERATEMRMGVGSWEWQIHGHPSGTTSVPLFSAAASSGFPSSSSSTAIPSASSGVGETHFPAIFY 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 770883 774111 + Cp4.1LG03g02120.1 Cpe03g00153 465870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00153 518 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 218 - -
Cpe03g00153 518 ProSiteProfiles AP2/ERF domain profile. 150 206 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 SMART rav1_2 276 339 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 SMART rav1_2 150 212 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 MobiDBLite consensus disorder prediction 121 150 - -
Cpe03g00153 518 CDD AP2 275 335 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 249 505 - -
Cpe03g00153 518 ProSiteProfiles AP2/ERF domain profile. 276 333 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 249 505 - -
Cpe03g00153 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 218 - -
Cpe03g00153 518 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 PRINTS Ethylene responsive element binding protein signature 315 335 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 SUPERFAMILY DNA-binding domain 275 334 IPR016177 GO:0003677
Cpe03g00153 518 Pfam AP2 domain 150 198 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 Pfam AP2 domain 275 324 IPR001471 GO:0003700|GO:0006355
Cpe03g00153 518 Gene3D AP2/ERF domain 149 208 IPR036955 GO:0003700|GO:0006355
Cpe03g00153 518 Gene3D AP2/ERF domain 275 334 IPR036955 GO:0003700|GO:0006355
Cpe03g00153 518 SUPERFAMILY DNA-binding domain 149 208 IPR016177 GO:0003677
Cpe03g00153 518 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00153 Cpe-Chr3:770883 Cpe05g01156 Cpe-Chr5:7851229 2.60E-09 dispersed
Cpe01g00229 Cpe-Chr1:1301560 Cpe03g00153 Cpe-Chr3:770883 1.96E-09 wgd
Cpe01g01135 Cpe-Chr1:6736665 Cpe03g00153 Cpe-Chr3:770883 6.27E-10 wgd
Cpe16g00565 Cpe-Chr16:6443669 Cpe03g00153 Cpe-Chr3:770883 7.81E-104 wgd
Cpe19g00398 Cpe-Chr19:3551661 Cpe03g00153 Cpe-Chr3:770883 9.56E-86 wgd
Cpe03g00153 Cpe-Chr3:770883 Cpe05g00875 Cpe-Chr5:5758181 2.41E-125 wgd
Cpe03g00153 Cpe-Chr3:770883 Cpe08g01126 Cpe-Chr8:8455417 6.14E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49139 PF00847 AP2 9.60E-10 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00153 K09284 - csv:101211242 694.115