Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00156 | ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAAGCTCTCCCTGCTAATGGGAAGATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTATCGGAGTTCATCAGTTTTATTACTAGCGAGGCAAGCGATAAATGCCAAAGAGAGAAACGAAAGACGATTAATGGCGATGATTTACTTTGGGCGATGGCCACTCTCGGATTTGAGGATTATATTGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGCTCGCTCATGGAGGCTCGTTTTCCCAAGGAGTTAATTATGCGACTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGTTAGGACACAGTATTTCCAACCAACTCCTGGGGGATCCCATTCATTTGTGGCTTGA | 561 | 47.42 | MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSVPQLAHGGSFSQGVNYATSQSQAQHLMVPMQVRTQYFQPTPGGSHSFVA | 186 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 787733 | 791370 | + | Cp4.1LG03g02160.1 | Cpe03g00156 | 465873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00156 | 186 | Gene3D | Histone, subunit A | 17 | 161 | IPR009072 | GO:0046982 | |
Cpe03g00156 | 186 | SUPERFAMILY | Histone-fold | 27 | 127 | IPR009072 | GO:0046982 | |
Cpe03g00156 | 186 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 30 | 94 | IPR003958 | - | |
Cpe03g00156 | 186 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 156 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Cpe03g00156 | 186 | MobiDBLite | consensus disorder prediction | 117 | 144 | - | - | |
Cpe03g00156 | 186 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cpe03g00156 | 186 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 61 | 77 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Cpe03g00156 | 186 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 156 | - | - | |
Cpe03g00156 | 186 | PRINTS | CCAAT-binding transcription factor subunit A signature | 58 | 76 | - | - | |
Cpe03g00156 | 186 | PRINTS | CCAAT-binding transcription factor subunit A signature | 77 | 95 | - | - | |
Cpe03g00156 | 186 | PRINTS | CCAAT-binding transcription factor subunit A signature | 96 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00156 | Cpe-Chr3:787733 | Cpe05g01389 | Cpe-Chr5:9768058 | 8.82E-60 | dispersed | |
Cpe01g00231 | Cpe-Chr1:1311500 | Cpe03g00156 | Cpe-Chr3:787733 | 3.58E-79 | wgd | |
Cpe01g01136 | Cpe-Chr1:6740878 | Cpe03g00156 | Cpe-Chr3:787733 | 3.40E-08 | wgd | |
Cpe03g00156 | Cpe-Chr3:787733 | Cpe08g01124 | Cpe-Chr8:8440769 | 3.15E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
49140 | PF00808 | CBFD_NFYB_HMF | 9.20E-28 | CL0012 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00156 | K08065 | - | csv:101212699 | 329.717 |