Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00156 ATGGCTGATGCTCCGGCGAGTCCCGGCGGAGGAAGTCATGAGAGCGGCGAGCAGAGTCCGAGGTCTAATGTTCGTGAACAGGATAGGTTTCTTCCTATTGCGAATATTAGCAGGATCATGAAGAAAGCTCTCCCTGCTAATGGGAAGATTGCTAAGGATGCTAAGGAGACCGTACAAGAATGTGTATCGGAGTTCATCAGTTTTATTACTAGCGAGGCAAGCGATAAATGCCAAAGAGAGAAACGAAAGACGATTAATGGCGATGATTTACTTTGGGCGATGGCCACTCTCGGATTTGAGGATTATATTGATCCGCTTAAAACCTACTTGACGAAATACAGAGAGGGTGACACTAAGGGGTCTGCTAAAGGTGGCGATGCGTCGGCTAAGAAAGAAGCTCATCCAACCTCTGTTCCTCAGCTCGCTCATGGAGGCTCGTTTTCCCAAGGAGTTAATTATGCGACTTCTCAATCACAAGCCCAGCATCTGATGGTTCCTATGCAAGTTAGGACACAGTATTTCCAACCAACTCCTGGGGGATCCCATTCATTTGTGGCTTGA 561 47.42 MADAPASPGGGSHESGEQSPRSNVREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKTYLTKYREGDTKGSAKGGDASAKKEAHPTSVPQLAHGGSFSQGVNYATSQSQAQHLMVPMQVRTQYFQPTPGGSHSFVA 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 787733 791370 + Cp4.1LG03g02160.1 Cpe03g00156 465873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00156 186 Gene3D Histone, subunit A 17 161 IPR009072 GO:0046982
Cpe03g00156 186 SUPERFAMILY Histone-fold 27 127 IPR009072 GO:0046982
Cpe03g00156 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Cpe03g00156 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe03g00156 186 MobiDBLite consensus disorder prediction 117 144 - -
Cpe03g00156 186 MobiDBLite consensus disorder prediction 1 28 - -
Cpe03g00156 186 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cpe03g00156 186 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Cpe03g00156 186 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Cpe03g00156 186 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Cpe03g00156 186 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00156 Cpe-Chr3:787733 Cpe05g01389 Cpe-Chr5:9768058 8.82E-60 dispersed
Cpe01g00231 Cpe-Chr1:1311500 Cpe03g00156 Cpe-Chr3:787733 3.58E-79 wgd
Cpe01g01136 Cpe-Chr1:6740878 Cpe03g00156 Cpe-Chr3:787733 3.40E-08 wgd
Cpe03g00156 Cpe-Chr3:787733 Cpe08g01124 Cpe-Chr8:8440769 3.15E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49140 PF00808 CBFD_NFYB_HMF 9.20E-28 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00156 K08065 - csv:101212699 329.717