Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00172 ATGGCGGCCAAGAACCATTTGAGCCTTCTTCTTCTCCTCCTTCTGCAGCTGTTTTATTCAGGAAGGGGCGAACTGCAAATTAATTATTATGCTAAAAGTTGCCCAAAAGCTGAAGAAATTATAAAACAGCAAGTTGCCGATCTCTACTATGAACATGGAAACACTGCCGTTTCGTGGCTTAGAAATCTCTTCCATGATTGCATTGTTAAGTCTTGTGATGCATCTATGCTGTTGGAAACGGTGACGGGAGTGGAATCAGAGAAGGATTCAGAGCGAAGTTTTGGGATGAGAAATTTCAAATACGTAAATAAGATCAAAGCTGCTGTTGAACAAGAATGCCCTCTCACTGTATCTTGTGCTGACATTGTTGCGCTATCGGCTCAATATGGCATAGTCATGCTAAAAGGGCCTGAAATTGAGTTGAAAACAGGGAGAAGAGACAGCAAAGTGAGCTATTCCCATCTTGTTGAAGCGTTTGTTCCCAGGCACAATGAATCTCTTGTAAATGTTCTCTCCCTCTTTAGCTCCATCGGCATTGATACCGAAGCAGCCGTCGCTCTTTTAGGAGCTCACTCGGTCGGGCGAGTTCACTGTGTGAACTTAGTGGAGAGGCTATATCCAAGCGTGGATCCAACCCTCGATCCCGAATACGCGAAATACTTGAAAGGTCGATGCCCGACACCAAATCCAGACCCGAAAGCAGTATTGTATTCGAGAAATGATCGGGAGACGCCAATGATTCTGGATAATATGTACTACAGTAATATACTGAACCATAAAGGGTTGCTCATAGTGGACCAAGAATTGGCTTCTAATCCTCTTACGCTTACCTACGTCAAGAAATTTGCAGCTGATAATCAATATTTCCATGCCCAATTCTCAAGGGGAATTCGTTTGTTGTCGGAAAACAATCCCCTCACCGGAGATGAAGGAGAGATTAGGAAAGATTGTCGCTTTGTTAATTAA 966 43.37 MAAKNHLSLLLLLLLQLFYSGRGELQINYYAKSCPKAEEIIKQQVADLYYEHGNTAVSWLRNLFHDCIVKSCDASMLLETVTGVESEKDSERSFGMRNFKYVNKIKAAVEQECPLTVSCADIVALSAQYGIVMLKGPEIELKTGRRDSKVSYSHLVEAFVPRHNESLVNVLSLFSSIGIDTEAAVALLGAHSVGRVHCVNLVERLYPSVDPTLDPEYAKYLKGRCPTPNPDPKAVLYSRNDRETPMILDNMYYSNILNHKGLLIVDQELASNPLTLTYVKKFAADNQYFHAQFSRGIRLLSENNPLTGDEGEIRKDCRFVN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 851765 853239 - Cp4.1LG03g01810.1 Cpe03g00172 465889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00172 321 SUPERFAMILY Heme-dependent peroxidases 24 321 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PANTHER PEROXIDASE 25-RELATED 13 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 239 254 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Plant peroxidase signature 255 272 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 Gene3D Peroxidase, domain 2 161 300 - -
Cpe03g00172 321 Gene3D - 28 321 - -
Cpe03g00172 321 PANTHER PEROXIDASE 21 13 319 - -
Cpe03g00172 321 Pfam Peroxidase 42 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 PRINTS Haem peroxidase superfamily signature 241 256 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 ProSiteProfiles Plant heme peroxidase family profile. 24 321 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cpe03g00172 321 CDD secretory_peroxidase 24 320 IPR033905 GO:0004601|GO:0042744
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00172 K00430 E1.11.1.7; peroxidase [EC:1.11.1.7] - csv:101215428 558.525
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe03g00172 Cpe08g01105 CCT
Cpe03g00172 Cpe10g00207 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00172 Cpe-Chr3:851765 Cpe05g01450 Cpe-Chr5:10105551 9.35E-59 dispersed
Cpe20g00365 Cpe-Chr20:2054530 Cpe03g00172 Cpe-Chr3:851765 4.26E-110 transposed
Cpe10g00207 Cpe-Chr10:1192530 Cpe03g00172 Cpe-Chr3:851765 7.17E-148 wgd
Cpe03g00172 Cpe-Chr3:851765 Cpe08g01105 Cpe-Chr8:8357747 1.04E-153 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g595 Blo01g01162 . . . . . Bma04g01699 . Cmo06g00364 Cmo14g00193 . . Car03g01121 . . Cpe10g00207 Cpe08g01105 Bhi03g01681 . . . Hepe04g0919 . . Cla04g00873 Cam04g0837 Cec04g1029 Cco04g1088 Clacu04g0934 Cmu04g0923 Cre04g0981 . . Cone6ag1090 . Lsi01g01358 . . Cme04g02541 . . . Bda05g01236 . Bpe02g00798 Bma01g01918 . Sed08g2365 Cmo03g01246 . Cma06g00369 Cma14g00201 Car06g00318 Car14g00179 Cpe03g00172 . Bhi11g02115 Tan08g1895 Cmetu04g1566 . . . . Cla10g01940 Cam10g2006 Cec10g2048 Cco10g2033 Clacu10g2013 Cmu10g2762 Cre10g2155 . Csa03g03263 Chy04g02078 Cme08g02323
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01450 . 3 328 Peroxidase AT3G21770 63.9 4.9e-116 414.8
Cpe04g00738 . 361 669 Peroxidase AT3G21770 62.9 9.9e-109 390.6
Cpe16g00452 . 3 290 Peroxidase AT3G21770 55.2 1.6e-90 330.1
Cpe15g00236 . 27 185 Peroxidase AT4G25980 51.6 2.5e-39 159.8
Cpe04g00738 . 49 344 Peroxidase AT1G05240 55.7 1.1e-94 344.0
Cpe04g00738 . 49 344 Peroxidase AT1G05250 55.7 1.1e-94 344.0
Cpe05g01450 . 3 328 Peroxidase AT1G05260 66.4 2.3e-126 449.1
Cpe04g00738 . 369 672 Peroxidase AT1G05260 66.2 4.7e-119 424.9
Cpe16g00452 . 3 292 Peroxidase AT1G05260 57.1 1.2e-98 357.1
Cpe10g00426 . 24 323 Peroxidase AT1G49570 64.4 6.2e-109 391.3
Cpe05g01223 . 23 198 Peroxidase AT1G49570 53.4 1.3e-45 181.0
Cpe19g00661 CCT 18 328 Peroxidase AT2G18980 66.2 1.4e-118 423.3
Cpe10g00471 CCT 4 260 Peroxidase AT2G18980 66.9 4.5e-98 355.1
Cpe13g01124 . 26 230 Peroxidase AT2G18980 65.2 8.1e-71 264.6
Cpe19g00257 . 53 225 Peroxidase AT2G18980 68.2 2.8e-63 239.6
Cpe02g00404 . 13 167 Peroxidase AT2G18980 63.9 3.1e-54 209.5
Cpe01g01727 . 29 143 Peroxidase AT2G18980 70.4 8.7e-41 164.9
Cpe01g00746 . 1 257 Peroxidase AT2G22420 74.3 1.5e-112 403.3
Cpe06g00280 . 35 212 Peroxidase AT2G24800 71.9 8.2e-68 254.2
Cpe15g00236 . 325 480 Peroxidase AT2G24800 55.3 5.2e-38 155.2
Cpe09g00820 . 35 350 Peroxidase AT2G34060 67.5 8.0e-125 444.1
Cpe03g00172 CCT 27 321 Peroxidase AT2G37130 75.3 2.2e-131 465.7
Cpe10g00207 CCT,CST 29 324 Peroxidase AT2G37130 66.2 4.6e-113 404.8
Cpe08g01105 CCT,CST 45 287 Peroxidase AT2G37130 62.5 3.3e-103 372.1
Cpe20g00365 CCT 36 305 Peroxidase AT2G37130 52.4 2.5e-87 319.3
Cpe05g00520 . 1318 1633 Peroxidase AT2G38380 50.6 7.4e-86 314.7
Cpe17g00102 . 28 323 Peroxidase AT2G39040 53.1 1.7e-82 303.5
Cpe15g00236 . 1 315 Peroxidase AT2G41480 61.3 1.4e-102 370.2
Cpe15g00237 . 45 236 Peroxidase AT2G41480 60.3 3.9e-65 245.7
Cpe04g00738 . 20 343 Peroxidase AT3G01190 59.4 5.2e-102 368.2
Cpe05g01450 . 28 327 Peroxidase AT3G01190 52.7 1.1e-83 307.4
Cpe05g01450 . 3 328 Peroxidase AT3G21770 63.9 4.9e-116 414.8
Cpe04g00738 . 361 669 Peroxidase AT3G21770 62.9 9.9e-109 390.6
Cpe16g00452 . 3 290 Peroxidase AT3G21770 55.2 1.6e-90 330.1
Cpe19g00661 CCT 1 328 Peroxidase AT3G49960 70.8 1.6e-135 479.6
Cpe10g00471 CCT 4 260 Peroxidase AT3G49960 74.7 3.7e-111 398.7
Cpe13g01124 . 15 233 Peroxidase AT3G49960 59.5 5.5e-67 251.9
Cpe19g00257 . 33 227 Peroxidase AT3G49960 66.3 1.6e-66 250.4
Cpe01g01727 . 29 141 Peroxidase AT3G49960 72.6 1.9e-43 173.7
Cpe02g00404 . 24 167 Peroxidase AT3G49960 52.9 3.6e-42 169.5
Cpe05g01450 . 8 327 Peroxidase AT4G11290 66.5 5.9e-122 434.5
Cpe04g00738 . 364 671 Peroxidase AT4G11290 66.1 2.3e-118 422.5
Cpe16g00452 . 8 292 Peroxidase AT4G11290 57.1 1.3e-97 353.6
Cpe20g00365 CCT 22 308 Peroxidase AT4G21960 76.3 1.0e-137 486.9
Cpe03g00172 CCT 25 321 Peroxidase AT4G21960 56.9 6.1e-98 354.8
Cpe10g00207 CCT,CST 27 325 Peroxidase AT4G21960 55.1 6.7e-97 351.3
Cpe15g00236 . 27 185 Peroxidase AT4G25980 51.6 2.5e-39 159.8
Cpe19g00661 CCT 24 328 Peroxidase AT4G30170 66.9 3.3e-120 428.7
Cpe10g00471 CCT 4 260 Peroxidase AT4G30170 66.1 7.1e-99 357.8
Cpe13g01124 . 26 230 Peroxidase AT4G30170 63.3 2.4e-70 263.1
Cpe19g00257 . 53 225 Peroxidase AT4G30170 69.9 7.1e-67 251.5
Cpe02g00404 . 12 167 Peroxidase AT4G30170 61.9 2.4e-54 209.9
Cpe01g01727 . 20 143 Peroxidase AT4G30170 67.7 1.2e-42 171.0
Cpe06g00280 . 37 348 Peroxidase AT4G31760 65.4 3.7e-116 415.2
Cpe10g01221 . 32 282 Peroxidase AT4G33420 60.5 7.8e-94 341.3
Cpe19g00661 CCT 12 328 Peroxidase AT4G37520 71.0 1.9e-128 456.1
Cpe10g00471 CCT 4 260 Peroxidase AT4G37520 70.8 5.6e-104 374.8
Cpe13g01124 . 20 230 Peroxidase AT4G37520 59.8 3.2e-67 252.7
Cpe19g00257 . 41 227 Peroxidase AT4G37520 69.0 3.0e-65 246.1
Cpe01g01727 . 15 140 Peroxidase AT4G37520 73.8 3.7e-47 186.0
Cpe02g00404 . 24 167 Peroxidase AT4G37520 56.3 3.8e-44 176.0
Cpe19g00661 CCT 1 281 Peroxidase AT4G37530 73.0 1.0e-114 410.2
Cpe10g00471 CCT 4 213 Peroxidase AT4G37530 71.4 2.0e-86 316.2
Cpe19g00257 . 43 227 Peroxidase AT4G37530 76.2 7.3e-76 281.2
Cpe13g01124 . 10 230 Peroxidase AT4G37530 62.5 1.3e-72 270.4
Cpe01g01727 . 15 143 Peroxidase AT4G37530 72.9 7.6e-49 191.4
Cpe02g00404 . 24 167 Peroxidase AT4G37530 57.6 1.6e-46 183.7
Cpe16g00679 . 69 393 Peroxidase AT5G05340 53.4 3.7e-84 308.9
Cpe05g00520 . 1333 1633 Peroxidase AT5G06720 57.8 2.5e-91 332.8
Cpe13g00085 . 20 314 Peroxidase AT5G06720 56.1 4.9e-87 318.5
Cpe10g00426 . 25 327 Peroxidase AT5G06720 52.0 1.8e-81 300.1
Cpe05g00521 . 8 277 Peroxidase AT5G06720 51.3 7.8e-77 284.6
Cpe05g00520 . 1333 1633 Peroxidase AT5G06730 58.4 1.0e-90 330.9
Cpe13g00085 . 20 314 Peroxidase AT5G06730 56.5 5.2e-87 318.5
Cpe10g00426 . 25 327 Peroxidase AT5G06730 53.6 1.6e-83 307.0
Cpe05g00521 . 8 277 Peroxidase AT5G06730 52.5 1.7e-77 287.0
Cpe19g00661 CCT 22 328 Peroxidase AT5G14130 57.7 2.5e-92 336.3
Cpe13g01124 . 15 233 Peroxidase AT5G14130 70.3 1.1e-82 304.3
Cpe10g00471 CCT 4 260 Peroxidase AT5G14130 56.0 4.9e-72 268.9
Cpe19g00257 . 14 225 Peroxidase AT5G14130 55.0 3.8e-56 216.1
Cpe02g00404 . 13 167 Peroxidase AT5G14130 51.7 3.9e-37 152.9
Cpe04g00738 . 30 343 Peroxidase AT5G15180 59.8 8.2e-103 370.9
Cpe05g01450 . 9 327 Peroxidase AT5G15180 51.9 1.1e-88 323.9
Cpe13g00085 . 22 314 Peroxidase AT5G19880 51.8 3.3e-80 295.8
Cpe05g00520 . 1338 1633 Peroxidase AT5G19880 50.3 6.9e-78 288.1
Cpe10g00426 . 24 327 Peroxidase AT5G19890 55.8 3.3e-88 322.4
Cpe15g00236 . 21 194 Peroxidase AT5G39580 70.3 2.6e-66 249.2
Cpe19g00876 . 22 191 Peroxidase AT5G39580 51.2 7.5e-42 167.9
Cpe06g00280 . 54 221 Peroxidase AT5G39580 53.6 3.2e-40 162.5
Cpe19g00876 . 24 317 Peroxidase AT5G42180 67.5 1.4e-115 413.3
Cpe07g00349 . 17 252 Peroxidase AT5G42180 54.5 3.9e-86 315.5
Cpe10g00685 . 1 184 Peroxidase AT5G42180 64.3 1.0e-62 237.7
Cpe19g00876 . 11 318 Peroxidase AT5G51890 54.0 1.2e-93 340.5
Cpe09g00117 . 5 253 Peroxidase AT5G51890 55.9 2.9e-89 325.9
Cpe10g00685 . 1 185 Peroxidase AT5G51890 50.5 8.1e-47 184.9
Cpe15g00236 . 3 313 Peroxidase AT5G64100 54.3 1.1e-83 307.4
Cpe15g00237 . 45 236 Peroxidase AT5G64100 56.0 2.8e-50 196.4
Cpe15g00236 . 324 590 Peroxidase AT5G64110 50.5 1.2e-74 277.3
Cpe15g00237 . 33 236 Peroxidase AT5G64110 53.6 4.1e-54 209.1
Cpe15g00236 . 317 590 Peroxidase AT5G64120 53.5 3.3e-88 322.4
Cpe15g00237 . 45 236 Peroxidase AT5G64120 60.4 2.2e-60 229.9
Cpe19g00661 CCT 1 328 Peroxidase AT5G67400 70.8 1.4e-134 476.5
Cpe10g00471 CCT 4 260 Peroxidase AT5G67400 77.8 2.1e-114 409.5
Cpe13g01124 . 22 230 Peroxidase AT5G67400 61.8 7.2e-67 251.5
Cpe19g00257 . 33 227 Peroxidase AT5G67400 63.8 2.3e-65 246.5
Cpe01g01727 . 29 141 Peroxidase AT5G67400 72.6 1.3e-44 177.6
Cpe02g00404 . 24 167 Peroxidase AT5G67400 55.9 2.3e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002774 2 2 1 1 1 2 3 2 2 0 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00172 Cpe_Chr03 FPKM 41.76511 48.625198 39.896477 39.498569 32.867996 30.052481 33.589035 69.846977 68.422081 71.521751