Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe03g00174 | ATGAGCGTGATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTACGACAAATATGATGTAGAGAAGCAGAGAGATCTCAATGTCTCTGGTGACGATGCATTCGCTCGACTCTATGCCACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCCAGAGAGAAGAATAGGGCATCGGTTGTGGCGTTGAATGCGGAGATTCGTCATACCAAGGCTCGATTACTAGAGGAGATCCCCAAGTTGCAGAGATTAGCTGTAAAGAGGGTTAAAGGACTATCAACTGAAGATCTTACCACTAGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGAACTACTTCTTCCTCAAAGAAGAATGGGGGTTGGAACTCCTCAACTTCACGTGCTGAAATCAAATTTGACTCGGATGGGCGATTTGATAATGAGTACTTCCAACACACTGAGGAGTCGAGTCAATTCAGACAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTAGACATGATATCAGAGGGGTTGGATACTCTGAAGAACATGGCGCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTAAGGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGCATTGATATCATTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA | 798 | 44.36 | MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASREKNRASVVALNAEIRHTKARLLEEIPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTTSSSKKNGGWNSSTSRAEIKFDSDGRFDNEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLRDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 858407 | 861828 | + | Cp4.1LG03g01950.1 | Cpe03g00174 | 465891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe03g00174 | 265 | SMART | tSNARE_6 | 165 | 232 | IPR000727 | - | |
Cpe03g00174 | 265 | Pfam | SNARE domain | 207 | 256 | IPR000727 | - | |
Cpe03g00174 | 265 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 170 | 232 | IPR000727 | - | |
Cpe03g00174 | 265 | CDD | SNARE_Qc | 175 | 230 | - | - | |
Cpe03g00174 | 265 | Gene3D | - | 170 | 231 | - | - | |
Cpe03g00174 | 265 | PANTHER | SYNTAXIN-73 | 1 | 261 | - | - | |
Cpe03g00174 | 265 | Coils | Coil | 40 | 67 | - | - | |
Cpe03g00174 | 265 | PANTHER | SYNTAXIN | 1 | 261 | IPR045242 | - | |
Cpe03g00174 | 265 | ProSitePatterns | Syntaxin / epimorphin family signature. | 176 | 215 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Cpe03g00174 | 265 | MobiDBLite | consensus disorder prediction | 120 | 139 | - | - | |
Cpe03g00174 | 265 | Coils | Coil | 219 | 239 | - | - | |
Cpe03g00174 | 265 | SUPERFAMILY | SNARE fusion complex | 163 | 230 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe03g00174 | Cpe-Chr3:858407 | Cpe09g00212 | Cpe-Chr9:1223998 | 4.30E-06 | dispersed | |
Cpe02g00841 | Cpe-Chr2:5402543 | Cpe03g00174 | Cpe-Chr3:858407 | 0 | transposed | |
Cpe16g00543 | Cpe-Chr16:6290195 | Cpe03g00174 | Cpe-Chr3:858407 | 2.69E-56 | wgd | |
Cpe03g00174 | Cpe-Chr3:858407 | Cpe05g00828 | Cpe-Chr5:5125039 | 1.69E-119 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe03g00174 | K08506 | - | csv:101215905 | 481.485 |