Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00174 ATGAGCGTGATCGACCTTTTGACCAGAGTAGACGCGATCTGCCAGAAGTACGACAAATATGATGTAGAGAAGCAGAGAGATCTCAATGTCTCTGGTGACGATGCATTCGCTCGACTCTATGCCACCGTCGAAGCCGACATTGAAGCCGCTCTCCAGAAAGCGGAGGATGCTTCCAGAGAGAAGAATAGGGCATCGGTTGTGGCGTTGAATGCGGAGATTCGTCATACCAAGGCTCGATTACTAGAGGAGATCCCCAAGTTGCAGAGATTAGCTGTAAAGAGGGTTAAAGGACTATCAACTGAAGATCTTACCACTAGAAATGATTTGGTGCTTGCATTGCCGGATAGGATTCAAGCTATACCAGATGGAACTACTTCTTCCTCAAAGAAGAATGGGGGTTGGAACTCCTCAACTTCACGTGCTGAAATCAAATTTGACTCGGATGGGCGATTTGATAATGAGTACTTCCAACACACTGAGGAGTCGAGTCAATTCAGACAAGAGTATGAAATGCGGAAAATGAAGCAGGATCAAGGATTAGACATGATATCAGAGGGGTTGGATACTCTGAAGAACATGGCGCATGATATGAATGAGGAAATAGACAGGCAAGTTCCTTTGATGGACGAGATTGACACTAAGGTGGACAAGGCTGCATCTGACCTTAAGAACACCAACGTTAGATTAAGGGACACAGTTAACCAGCTAAGGTCCAGCAGAAATTTCTGCATTGATATCATTTTGTTGTGTATAATCTTGGGTATTGCTGCCTATCTATACAATGTGTTGAAGAAGTGA 798 44.36 MSVIDLLTRVDAICQKYDKYDVEKQRDLNVSGDDAFARLYATVEADIEAALQKAEDASREKNRASVVALNAEIRHTKARLLEEIPKLQRLAVKRVKGLSTEDLTTRNDLVLALPDRIQAIPDGTTSSSKKNGGWNSSTSRAEIKFDSDGRFDNEYFQHTEESSQFRQEYEMRKMKQDQGLDMISEGLDTLKNMAHDMNEEIDRQVPLMDEIDTKVDKAASDLKNTNVRLRDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 858407 861828 + Cp4.1LG03g01950.1 Cpe03g00174 465891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00174 265 SMART tSNARE_6 165 232 IPR000727 -
Cpe03g00174 265 Pfam SNARE domain 207 256 IPR000727 -
Cpe03g00174 265 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 170 232 IPR000727 -
Cpe03g00174 265 CDD SNARE_Qc 175 230 - -
Cpe03g00174 265 Gene3D - 170 231 - -
Cpe03g00174 265 PANTHER SYNTAXIN-73 1 261 - -
Cpe03g00174 265 Coils Coil 40 67 - -
Cpe03g00174 265 PANTHER SYNTAXIN 1 261 IPR045242 -
Cpe03g00174 265 ProSitePatterns Syntaxin / epimorphin family signature. 176 215 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe03g00174 265 MobiDBLite consensus disorder prediction 120 139 - -
Cpe03g00174 265 Coils Coil 219 239 - -
Cpe03g00174 265 SUPERFAMILY SNARE fusion complex 163 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00174 Cpe-Chr3:858407 Cpe09g00212 Cpe-Chr9:1223998 4.30E-06 dispersed
Cpe02g00841 Cpe-Chr2:5402543 Cpe03g00174 Cpe-Chr3:858407 0 transposed
Cpe16g00543 Cpe-Chr16:6290195 Cpe03g00174 Cpe-Chr3:858407 2.69E-56 wgd
Cpe03g00174 Cpe-Chr3:858407 Cpe05g00828 Cpe-Chr5:5125039 1.69E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00174 K08506 - csv:101215905 481.485