Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00175 ATGTCAACTAATCCCTTCTCTCTTCTCTCTTCCACTCCCACTTCCACTCCCTTTGCTCACCACCCAGATGCAAACCCTAGCCCTAACCCTAAACCCAAACCCTCCGCTGCGGCGAAGAAGAAGCGGAACCTCCCCGGAACCCCAGATCCTGATGCGGAGGTTGTTGCTTTGTCGCCGAAATCGCTCATGGCGACAAATAGATTCATATGTGAAATTTGCAATAAGGGGTTTCAAAGAGATCAGAATCTGCAACTTCATCGACGAGGACATAACCTACCATGGAAGCTTCGACAACGAACGAACAAGGAGCCGATTAAGAAGAAGGTGTATATTTGCCCGGAGAAGACGTGCGTTCACCATGATCCATCACGAGCCCTCGGCGATCTCACCGGAGTAAAGAAACATTTCAGCCGAAAACACGGCGAGAAGAAGTGGAAATGTGATAAGTGTTCTAAGAAATATGCGGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGGACTAGAGAATATAAGTGTGATTGTGGAACCCTTTTTTCCAGGAAAGACAGCTTCATAACCCACAGAGCATTTTGCGATGCATTAGCTGAAGAAAGTGCAAGAATCACGACAGTTTCAGCAACAAATATTCTGAATAATCTCAGAAATGATTCAGTTCTTCTTCATCAACAAGATCAATCTTTGATTGATCATCAGACCAATAATCTTCAAACACTTGGAGATGTTCCTGCCCTTTCCCAATTCACTCACTCTGATCATTTTCTAAGAGACTTTGAAGATCATCAACACAAGAACAGATCTCCTTTCTCTCTTTGGTTGAACAATAACAACAATATCTCCAACTTTTATGGACCTTCCTCTTCTTCTTCCAATCTTTTTGGATCCATAGCCGAAACCGGCCTTTCCATGTTGCCCGTGTTCGAGAAGGAAGATGTCGAGAAGAAGGGAAGTTTGTCGAAAGCTACGTCCTCGGCAGCTGCACTGTTGTCGGGTCAGTCGTCGTCCGTTGTTTCTTCTTCTCCGATGTCGGCCACCGCCCTTCTGCAAAAAGCTGCTCTTATGGGCTCTACTAGAAGCAGCACCAACAATAATTCCCCGCTCATCGATGCCGGTGCTTTCGGAGTGATGAACTCTTCGTCTTTGTCGTCGTCCTCGTCCTCCAACGCTGTAAGCTTGAACTCTCTGAACAAATCTAGAAGCATGACAATGGCTGACTCGGTTCAGATGGTCGGTACCAACTCCGATTTAAGCTCGAATATTCTCAGCCAGCTTCTAATGCCACTCAACAATGGTAACAACAGTATGAAAAGTAACGACCAAACGAGAGACTTCCTTGGTGTCGGAGGAAACGGAGAAGCACCCCAGCCACCGTTCCTTCCACCGGAGCTGGCAAAATTCGCCGCCATAAACTCAACAATGGGACTAAGCCAGTTCGCCGCCAACCACTAA 1452 46.42 MSTNPFSLLSSTPTSTPFAHHPDANPSPNPKPKPSAAAKKKRNLPGTPDPDAEVVALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEPIKKKVYICPEKTCVHHDPSRALGDLTGVKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARITTVSATNILNNLRNDSVLLHQQDQSLIDHQTNNLQTLGDVPALSQFTHSDHFLRDFEDHQHKNRSPFSLWLNNNNNISNFYGPSSSSSNLFGSIAETGLSMLPVFEKEDVEKKGSLSKATSSAAALLSGQSSSVVSSSPMSATALLQKAALMGSTRSSTNNNSPLIDAGAFGVMNSSSLSSSSSSNAVSLNSLNKSRSMTMADSVQMVGTNSDLSSNILSQLLMPLNNGNNSMKSNDQTRDFLGVGGNGEAPQPPFLPPELAKFAAINSTMGLSQFAANH 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 867681 870314 + Cp4.1LG03g01960.1 Cpe03g00175 465892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00175 483 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 24 453 - -
Cpe03g00175 483 MobiDBLite consensus disorder prediction 1 51 - -
Cpe03g00175 483 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cpe03g00175 483 SMART c2h2final6 145 165 IPR013087 -
Cpe03g00175 483 SMART c2h2final6 68 90 IPR013087 -
Cpe03g00175 483 SMART c2h2final6 110 140 IPR013087 -
Cpe03g00175 483 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Cpe03g00175 483 MobiDBLite consensus disorder prediction 1 22 - -
Cpe03g00175 483 Gene3D Classic Zinc Finger 47 119 - -
Cpe03g00175 483 Gene3D Classic Zinc Finger 120 202 - -
Cpe03g00175 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cpe03g00175 483 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 453 - -
Cpe03g00175 483 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00175 Cpe08g01104 CCT
Cpe03g00175 Cpe08g01104 ECH
Cpe03g00175 Cpe19g00403 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g01726 Cpe-Chr2:14127921 Cpe03g00175 Cpe-Chr3:867681 2.70E-116 dispersed
Cpe03g00175 Cpe-Chr3:867681 Cpe10g00600 Cpe-Chr10:3504977 5.52E-115 dispersed
Cpe04g00706 Cpe-Chr4:7011986 Cpe03g00175 Cpe-Chr3:867681 2.15E-82 dispersed
Cpe17g00479 Cpe-Chr17:3563821 Cpe03g00175 Cpe-Chr3:867681 5.98E-104 dispersed
Cpe20g00766 Cpe-Chr20:6826444 Cpe03g00175 Cpe-Chr3:867681 4.43E-108 dispersed
Cpe01g00883 Cpe-Chr1:5199600 Cpe03g00175 Cpe-Chr3:867681 2.44E-106 transposed
Cpe09g00622 Cpe-Chr9:4502966 Cpe03g00175 Cpe-Chr3:867681 6.68E-113 transposed
Cpe19g00403 Cpe-Chr19:3582056 Cpe03g00175 Cpe-Chr3:867681 5.02E-121 wgd
Cpe03g00175 Cpe-Chr3:867681 Cpe08g01104 Cpe-Chr8:8347530 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49143 PF12171 zf-C2H2_jaz 7.00E-05 CL0361 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00175 K25870 - csv:101213422 686.797