Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g00177 | ATGGGTAACATTGGTAGTAGCGGTTCCAATACCCGGAGAAGGCACGGTAGCCGCCGGGGCGGCCATCCGACTCCGCCTCCACCAGCCCCACCGCAGCCCGAAATCACAAGTAATCGGTACGTTTTCGCTGCCGCTACTCCTTACCCATCTCAATACCCCAACCATCCGAATCACCCACCGCCGTATTACCAGTACCCTGGTTACTTTCCGCCGCCGCCGCCTGGTCCGCCGCCGTCGATGCCGATGTCTTTGCCGCCTCCTTACGATCACCACCACCGTGGAGCCCATCCCCACATGGATCCCGCGCATTGGGTCGGTGGGAGGTACCCTTATGGCCCTTCTATGCCGCCTCAAACGCCGTATGTTGAGCATCAGAAGGCGGTTACCATACGAAACGATGTCAATCTCAAGAAGGAAACTCTAAGGGTCGAGCCTGATGAAGAAAACCCCGGCCAATTCCTTGTAGCATTCACGTTCGATGCCACCGTCGCCGGAAGTATCACCATCTTCTTCTTTGCAAAAGAAGGTGAAGATTGCAACTTGACTCCCGTAAAAGAAGACATTCTTCAACCAGTAACTGTCCATTTCGAACAAGGCCTTGGACAGAAGTTCAGACAACCTTCTGGAACAGGAATAGATTTCTCAAAGTTTGAAGAGTCAGAATTTCTGAAAGTAAATGACACGGATGTCTATCCATTAGCAGTGAAAGCTGAAGCCTCCACCGACAGCCAAACTGGACCAGATGGTACCTTGGTACCTGAGCCCATGAATGCTCAGATAACCCAGGCTGTGTTTGAGAAAGATAAAGGTGAATATCAGGCAAGAGTGTTGAAACAAATCCTGTGGGTCAATGGTATGAGATATGAGCTGCAGGAGATATATGGCATTGGCAATTCAGTCGAGGGCGAGGTCGATGGAAATGACCCTGGAAAGGAATGCGTCATTTGCTTGTCGGAACCACGGGACACGACTGTACTTCCCTGCCGACACATGTGCATGTGTAGTGGTTGTGCTAAGGTATTGAGGTTCCAGACGAATCGATGCCCGATTTGCAGACAACCAGTCGATAGGCTCTTAGAGATAAGGGTCAGCAATGGGCCAGAAGAATAA | 1110 | 51.26 | MGNIGSSGSNTRRRHGSRRGGHPTPPPPAPPQPEITSNRYVFAAATPYPSQYPNHPNHPPPYYQYPGYFPPPPPGPPPSMPMSLPPPYDHHHRGAHPHMDPAHWVGGRYPYGPSMPPQTPYVEHQKAVTIRNDVNLKKETLRVEPDEENPGQFLVAFTFDATVAGSITIFFFAKEGEDCNLTPVKEDILQPVTVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLAVKAEASTDSQTGPDGTLVPEPMNAQITQAVFEKDKGEYQARVLKQILWVNGMRYELQEIYGIGNSVEGEVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIRVSNGPEE | 369 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 875385 | 879037 | - | Cp4.1LG03g01770.1 | Cpe03g00177 | 465894 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g00177 | 369 | PANTHER | MAHOGUNIN | 1 | 369 | IPR045194 | GO:0061630 | |
| Cpe03g00177 | 369 | ProSiteProfiles | Zinc finger RING-type profile. | 313 | 352 | IPR001841 | - | |
| Cpe03g00177 | 369 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 297 | 362 | IPR013083 | - | |
| Cpe03g00177 | 369 | MobiDBLite | consensus disorder prediction | 1 | 59 | - | - | |
| Cpe03g00177 | 369 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 369 | - | - | |
| Cpe03g00177 | 369 | SUPERFAMILY | RING/U-box | 312 | 358 | - | - | |
| Cpe03g00177 | 369 | SMART | ring_2 | 313 | 351 | IPR001841 | - | |
| Cpe03g00177 | 369 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 312 | 352 | IPR045195 | - | |
| Cpe03g00177 | 369 | Pfam | Zinc finger, C3HC4 type (RING finger) | 311 | 357 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00177 | Cpe08g01101 | CCT | |
| Cpe03g00177 | Cpe08g01101 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00177 | Cpe-Chr3:875385 | Cpe08g00242 | Cpe-Chr8:1585153 | 4.40E-91 | dispersed | |
| Cpe17g00460 | Cpe-Chr17:3426521 | Cpe03g00177 | Cpe-Chr3:875385 | 6.68E-06 | dispersed | |
| Cpe03g00177 | Cpe-Chr3:875385 | Cpe08g01101 | Cpe-Chr8:8334004 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g00177 | - | - | cmax:111482503 | 639.032 |