Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00195 ATGTCACAAGATTCTGAGGAGATTAAGACGACTGAGAAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTCCTCTCTTCTGATCCTCCTCCTCCTAAACCATCACCCCCAACACCGAAACACACAGACCCCGAAGACCTCAGCTCCAAAGAGGAGGAGGCTGAACACGGAATTGGCAGACCCATAAACGGAGAAATGGAATCTTCAACTGATTCCAAGAAGGAAAACGGCGGTGGCACCAGTGGGGAGAAACCTGAAGCCGTCAGTTCTGTTGGGTTTGGGGAGCTTTTCAGATTCGCGGATGGGTTGGATTACGTTTTGATGGCAATTGGGTCGGTCGGAGCCCTTGTCCACGGTTGTTCTTTGCCTCTGTTTCTCCGTTTCTTCGCTGATCTTGTTAACTCTTTTGGGTCTTACGCCAATGATGTGGATAAAATGATGCAGGAGGTTTTGAAGTACGCATTTTACTTCCTCGTGGTTGGAGCTGCGATATGGGCGTCATCCTGGGCAGAGATTTCATGTTGGATGTGGACCGGCGAGCGGCAGTCCACAAAGATGAGGATCAAGTACCTAGAAGCCGCACTGGACCAAGACATTCAGTATTTTGATACAGAGGTGCGAACATCTGACGTCGTTTTCGCCATCAACACGGATGCAGTGATGGTCCAAGACGCCATTAGTGAGAAGCTGGGCAACTTCATCCACTATATGGCAACATTTGTGTCCGGATTCGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCGTTGGTAACTCTTGCGGTGGTTCCTTTGATTGCCGTAATCGGCGGCATCTACACCACCACAATAGCCAAGCTCTCTGCCAAGTCCCAGGAAGCTCTTTCAGAGGCTGGAAATATCGTTGAACAGACAATAGTTCAAATCCGAGTTGTTTTGGGGTTCGTGGGCGAATCAAGAGCGTTGCAGAGATACTCCTCCGCGTTGAAGATTTCTCAGAAGATAGGTTACAAGACTGGATTCTCCAAGGGTATGGGATTGGGCGCCACTTACTTTGTTGTTTTCTGCTGTTACGCTCTTCTGCTCTGGTACGGAGGTTATCTCGTCAGACACCACGCCACCAATGGCGGTCTGGCCATAGCCACTATGTTTGCCGTGATGATTGGCGGACTGGCATTGGGACAATCTGCTCCGAGCATGAGTTCGTTCGCAAAGGCTAGAGTTGCAGCTGCCAAAATCTATCGTATAATCGATCACAAGCCCACTCTAAACAGCAACAACGAATCTGGTTTGGAATTAGAGTCAGTTTCAGGACTGGTTGAGCTGAAGAATGTGGATTTCTCATACCCATCAAGGCCAGATGTAAGAATCCTGAACAACTTCTCTCTAACTGTCCCTGCCGGAAAAACTATAGCTCTGGTCGGTAGCAGCGGCTCGGGCAAGAGCACCGTCATCTCCCTAATTGAAAGATTCTATGACCCCATTTCAGGGCTTCAAGTGCCAGGAACTCATCTTTCTCTGGATTCTTCACTTCCCAATTACAGGCTTGAAAAACTTGCCTTTAAGGAGCAAGCCAGTTCCTTCTGGCGTCTTGTGAAAATGAATTCACCCGAATGGCTTTATGCATTACTTGGTTCTGTTGGTTCTGTTGTCTGTGGGTTTCTAAGCGCCTTCTTTGCATATGTTCTGAGTGCTGTTCTCAGTGTCTATTACAACCCAGACCATGCTTTCATGAGCAGAGAAATTATTAAGTACTGCTACTTATTAATCGGACTTTCGTCAGCTGCTCTTCTCTTCAATACAATACAGCATTTCTTCTGGGATATTGTGGGAGAGAACCTCACCAAACGTGTGAGAGAAAAGATGCTGACAGCAGTACTGAAAAACGAAATGGCATGGTTTGACCAGGAAGAAAATGAAAGTGCAAAAATTGCTGCTAGGCTGGCCCTTGACGCTAACAACGTTAGATCAGCTATTGGAGACAGGATTTCTGTGATTGTACAGAACACGTCACTCATGCTAGTTGCATGCACAGCTGGGTTCGTTTTGCAGTGGCGCCTATCCCTTGTCCTTGTAGCCGTCTTCCCCGTGGTTGTTGCGGCCACTGTTCTACAGAAAATGTTCATGACTGGTTTTTCAGGAGACCTTGAGGCTAACCATGCCAAGGCCACACAACTTGCAGGGGAAGCCATAGCCAATGTAAGGACAGTTGCTGCATTCAATTCAGAGGAAAAGATTGTCAGACTTTTCTCAACCAACCTCGAGATCCCACTACGCCGCTGCTTTTGGAAGGGACAGATTGCTGGCAGCGGCTTTGGCGTTGCTCAGTTCTCTCTTTACGCTTCCTATGCTCTTGGTCTTTGGTATGCATCATGGCTTGTCAAGCATGGGCTCTCTGATTTTTCGAAGGCAATCCGTGTTTTCATGGTCCTTATGGTTTCTGCAAATGGCGCAGCTGAAACACTCACTCTAGCTCCTGACTTTATTAAGGGTGGTCGAGCCATGCGATCCGTCTTTGCACTTCTTGACCGCAAAACTGAAATTGAACCTGATGATCCAGATGCCACTCCAGTCCCAGATAAACTTCGTGGAGAAGTTGAATTTAAACATGTTGACTTTTCCTACCCAACTCGCCCTGATATCCCTGTCTTTAGAGATCTTAGTTTGCGTGCCCGAGCAGGTAAGACTCTTGCTCTTGTTGGCCCGAGTGGGTGTGGCAAGAGCTCTGTTATTGCACTAGTCCAAAGATTCTATGAGCCAACTTCAGGACGAGTTATGATTGATGGAAAAGATATTCGTTCAACTTCCTCAGCAAAAACTAGAGAGGATGAGGACAGAGAGAGCTAG 2823 47.61 MSQDSEEIKTTEKWKWSEMQGLELLSSDPPPPKPSPPTPKHTDPEDLSSKEEEAEHGIGRPINGEMESSTDSKKENGGGTSGEKPEAVSSVGFGELFRFADGLDYVLMAIGSVGALVHGCSLPLFLRFFADLVNSFGSYANDVDKMMQEVLKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALDQDIQYFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIYTTTIAKLSAKSQEALSEAGNIVEQTIVQIRVVLGFVGESRALQRYSSALKISQKIGYKTGFSKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLALGQSAPSMSSFAKARVAAAKIYRIIDHKPTLNSNNESGLELESVSGLVELKNVDFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVISLIERFYDPISGLQVPGTHLSLDSSLPNYRLEKLAFKEQASSFWRLVKMNSPEWLYALLGSVGSVVCGFLSAFFAYVLSAVLSVYYNPDHAFMSREIIKYCYLLIGLSSAALLFNTIQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESAKIAARLALDANNVRSAIGDRISVIVQNTSLMLVACTAGFVLQWRLSLVLVAVFPVVVAATVLQKMFMTGFSGDLEANHAKATQLAGEAIANVRTVAAFNSEEKIVRLFSTNLEIPLRRCFWKGQIAGSGFGVAQFSLYASYALGLWYASWLVKHGLSDFSKAIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFALLDRKTEIEPDDPDATPVPDKLRGEVEFKHVDFSYPTRPDIPVFRDLSLRARAGKTLALVGPSGCGKSSVIALVQRFYEPTSGRVMIDGKDIRSTSSAKTREDEDRES 940
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 970459 976589 - Cp4.1LG03g01680.1 Cpe03g00195 465912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00195 940 Pfam ABC transporter transmembrane region 538 805 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe03g00195 940 Pfam ABC transporter transmembrane region 110 382 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe03g00195 940 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 397 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe03g00195 940 Gene3D - 849 936 IPR027417 -
Cpe03g00195 940 MobiDBLite consensus disorder prediction 926 940 - -
Cpe03g00195 940 Pfam ABC transporter 450 490 IPR003439 GO:0005524
Cpe03g00195 940 Gene3D ABC transporter type 1, transmembrane domain 511 845 IPR036640 GO:0005524|GO:0016021
Cpe03g00195 940 SUPERFAMILY ABC transporter transmembrane region 522 844 IPR036640 GO:0005524|GO:0016021
Cpe03g00195 940 CDD ABC_6TM_Pgp_ABCB1_D2_like 525 840 - -
Cpe03g00195 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 933 IPR027417 -
Cpe03g00195 940 MobiDBLite consensus disorder prediction 920 940 - -
Cpe03g00195 940 MobiDBLite consensus disorder prediction 1 16 - -
Cpe03g00195 940 Pfam ABC transporter 877 932 IPR003439 GO:0005524
Cpe03g00195 940 MobiDBLite consensus disorder prediction 39 60 - -
Cpe03g00195 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 491 IPR027417 -
Cpe03g00195 940 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 511 933 - -
Cpe03g00195 940 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 108 489 - -
Cpe03g00195 940 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 511 933 IPR039421 -
Cpe03g00195 940 CDD ABC_6TM_Pgp_ABCB1_D1_like 108 405 - -
Cpe03g00195 940 Gene3D - 430 489 IPR027417 -
Cpe03g00195 940 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 108 489 IPR039421 -
Cpe03g00195 940 MobiDBLite consensus disorder prediction 1 86 - -
Cpe03g00195 940 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 535 822 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cpe03g00195 940 SUPERFAMILY ABC transporter transmembrane region 96 413 IPR036640 GO:0005524|GO:0016021
Cpe03g00195 940 Gene3D ABC transporter type 1, transmembrane domain 155 429 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00195 Cpe-Chr3:970459 Cpe13g00944 Cpe-Chr13:7948987 7.08E-26 dispersed
Cpe06g00057 Cpe-Chr6:296393 Cpe03g00195 Cpe-Chr3:970459 0 transposed
Cpe03g00195 Cpe-Chr3:970459 Cpe08g01084 Cpe-Chr8:8234339 1.95E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00195 K05658 - csv:101215102 845.499