Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00212 ATGAAGATCCAAACTAACTTCCTCTTTTGGCTCTGTTCTCTTCTCATTGCAGCTCTTTCCATCACCATTGCCCTGCGCCCATTCCCGCCTTCCTTGACTGCCATCCTCGCCGCTGTCCGTCCTCAAGACGGTGCTTTTGAGCTTGGCATTTTCAGCAGTCTAGCGAAAGCGAGTGGTTCGGATGATCTCTTGTCTCTTGTGACTCAAATTGCGTCCAAATACTATCAGTTGAAGCATAAAGAAAATTGTGATGAGAAGAAATGGAACTCTGAGTTGAAATCTTTGTACAATGTTTCACTCACTTTGACAGTCGATTTGAAGGGATGTGCAAATTTTAGCACTGTGCAAAGCGCAGTGGACGCTGTTCCTGATCATGCCTCTTCAAGGACCCTTATCCTAATTGACTCTGGAATCTACAGGGAGAAGGTGATGATAGAAGCCAACAAGACAAACTTGATAATTCAAGGCCAAGGCTACCTCAACACTTCAATAGAATGGAATGACACTGCCAATTCCACGGGAGGTACCGCTTACAGGACTGTTGGAGGACAAGCAGTGGCACTTCGAATTGCAGGAGATGAAGCTGCTTTCTATGGATGTGGGTTTTATGGAGCTCAAGACACACTCTATGATGACAAGGGAAGACATTACTTTAAAGAATGTTTCATTCAAGGGTCCATTGATTTCATCTTTGGCAATGCTCGATCGCTCTATGATAGTTGTAGCATCAAGTCAATAGCAAAGGCAATGGTGGATGGCGGGGTGAGTGGAGCCATCACAGCACAAGGAAGGCAAACAAGAATGGAGGAAACTGGTTTTGCCTTCATCAACTGCACCATCAATGGCTCTGGGAAGGTGTGGCTTGGCCGTGCCTGGGGCGTCTCTGCCACTGTCATCTTCTCTAAAACATACATGACCGACGTGGTGGCTGCTGACGGATGGAATGACTGGGGACACCCTTCAAGAGACGAGAGTGTGTTCTTTGGGGAATATGAATGCTCTGGAGAAGGAGCAAATCGCAGCTTGAGAGTGCCATATTCAAAGCACCTGAATCAAGTGGAGGCTGAGCCATACATGAGTGTTTCCTACATTGATGGAGATCAATGGCTCATCCATCAACAAATTACCCTTTTCTCTTCTATTTAA 1146 46.07 MKIQTNFLFWLCSLLIAALSITIALRPFPPSLTAILAAVRPQDGAFELGIFSSLAKASGSDDLLSLVTQIASKYYQLKHKENCDEKKWNSELKSLYNVSLTLTVDLKGCANFSTVQSAVDAVPDHASSRTLILIDSGIYREKVMIEANKTNLIIQGQGYLNTSIEWNDTANSTGGTAYRTVGGQAVALRIAGDEAAFYGCGFYGAQDTLYDDKGRHYFKECFIQGSIDFIFGNARSLYDSCSIKSIAKAMVDGGVSGAITAQGRQTRMEETGFAFINCTINGSGKVWLGRAWGVSATVIFSKTYMTDVVAADGWNDWGHPSRDESVFFGEYECSGEGANRSLRVPYSKHLNQVEAEPYMSVSYIDGDQWLIHQQITLFSSI 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1059808 1061698 - Cp4.1LG03g01410.1 Cpe03g00212 465929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00212 381 Pfam Pectinesterase 103 180 IPR000070 GO:0030599|GO:0042545
Cpe03g00212 381 Pfam Pectinesterase 183 367 IPR000070 GO:0030599|GO:0042545
Cpe03g00212 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 12 178 - -
Cpe03g00212 381 PANTHER PECTINESTERASE 14-RELATED 12 178 - -
Cpe03g00212 381 ProSitePatterns Pectinesterase signature 2. 223 232 IPR033131 -
Cpe03g00212 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 180 375 - -
Cpe03g00212 381 SUPERFAMILY Pectin lyase-like 98 370 IPR011050 -
Cpe03g00212 381 Gene3D - 95 178 IPR012334 -
Cpe03g00212 381 Gene3D - 179 380 IPR012334 -
Cpe03g00212 381 PANTHER PECTINESTERASE 14-RELATED 180 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00212 Cpe-Chr3:1059808 Cpe14g00419 Cpe-Chr14:2627811 6.51E-117 dispersed
Cpe13g00234 Cpe-Chr13:1827937 Cpe03g00212 Cpe-Chr3:1059808 1.64E-44 dispersed
Cpe03g00212 Cpe-Chr3:1059808 Cpe04g01091 Cpe-Chr4:9501814 2.44E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00212 - - csv:101219157 590.882