Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00220 ATGGAAGATAGAAATATTATAAAAGAACAATCCCATAAACCCAACTTTGCTCATAAATCTTCCCATTTCACAACTCAAAACCTTCAAAATTTCACCGAAATGCGGGCTTTCTCTTCCTTGATCTTGGCCTTAGCTGCCGTTGTTCTGCCGGCAGCGGTGGTTTACTGCGGCTTCCCCGTCCCACTTCTCTCTCTGCAGAGGGCCTTCCCTTCTTCTCGCCCTGTCCAACTCGAAACCCTTAGAGCTCGGGACCGACTAAGGCATGCCAGAATGTTGCAAGGTGTCGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCATTGCTCATCGGGCTTTACTTTACGAAAGTCAAATTGGGCACTCCCCCAAGGGAATTTACGGTGCAGATCGACACTGGAAGTGATATTTTGTGGGTGAACTGCAATTCCTGCAATGGATGCCCCACATCAAGTGGACTTGGAGTAAGGGTCTTTCTTTTCACCTCCTCTCTTGCTAGTGTCAAATTGCCCTATGGCCTCCACGCTAGAGTCCTTATTTTAGTTTACCCTGTGCAGATTCAACTAAATTTCTTTGATGCTTCCATCTCATCAAGTTCTTCACTCATCTCCTGTTCTGACCCAATATGCAAGTCTGCATTCCAAACAACTGGAACACAGTGTCTATCTCAGAGTAAACCATGCAGTTACACCTTTCAGTATGGTGATGGAAGTGGAACATCAGGTTATTATGTATCTGAGTCCATGTACTTCGACATGGTTATGGGACCTTCTATGATTGTTAACTCTTCAGCTACTGTTGTTTTTGGTTGTAGCACCTATCAGTCAGGAGACTTGACTAAATCAGACCATGCAATTGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTGTCAGCTCGAGGGGTAACCCCTAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGTGGCGGTATATTGGTTCTTGGTGAGGTTTTGGAGCCAGGCATTGTGTATAGCCCACTCGTGCCCTCTCAGCCTCACTATAACTTATACCTGCAAAGCATTGCTGTCAATGGTCAGACACTGCCAATTGATCCATCTGTGTTTGCAACATCAAACAATCGAGGAACTATTGTAGACTCTGGGACAACATTGGCTTACCTTGTTGAAGAAGCTTATACTCCGTTTGTCAACGCTATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAACCAGTGTTATCTAGTATCCACCAGTGTAGGCGAGATATTTCCTCTGGTTAGCTTAAACTTCGCGGGCAGTGCATCTATGGTGTTAAAACCTGAACAATATCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGTAACGATTTTAGGAGGTTCCCAAGCGGTAAACGTATCAGTCACATCTGAGAAGAACAGGTTCGTGAATGCAGGACAGTTGAGCGTGAGCGGTTCGACCCGAGATAAACTCCTCCAATCATCAACTATGGAAGCATTAGCAGTAGATTCCTGTAACCGTCATCGGCATTATTCCAAAGAAGGAAGTGATTACCAGACTTCAGGAGTTCGCGATTTCCCTTTTGTAATGGCGGCGGTTCCTCAGACGGCGGTTCATGCCTCTCCGGCTTCGCTCTATGTTGGCGACCTTCATCCTGATGTCACTGATGGTCAGCTCTTTGATGCTTTCTCTGGATTCAAGAGCCTCGCCTCTGTTCGTATCTGTAGAGATTCCGCCACTGGACGCTCTCTCTCTTATGGCTACGTCAATTTCATGTCTCCGCAAGACGCTACCAACGCGATAGAGGCAATGAATCACAGAATGCTCAATGGAAGAGCGATTCGAGTCATGTGGTCACGCCGCGATCCTGGTGCAAGAAAAAGTGGAATTGGAAACGTGTTTGTTAAGAACTTGAGCGATTCAATCAATGGTTTAGGACTTCAAGAGCTATTTAAGAAATTTGGAAATGTTCTGTCCAGCAAAGTAGTCACATCCGATGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAGTCTGAGGAGTCCGCAAAAGCTGCCATAGAGTCACTGAATGGTTTTACCATTGGGGATAAGCAGATATATGTCGGAAAGTTTATCTGGAAGAGTGAACGAGTCTTGGCCAATCCTGATGTTAAATACACCAATTTGTATGTGAAAAATCTTGACTCAGAGATCGGGGAAGAGCATTTGCAGGAAAAGTTTTCTGAGTTCGGAAAGATTTCCAGCATGATTATTTCAAGGGATGAGAATGGAATGTCAAGAGGTTTTGGCTTTATAAACTTTGTGAACCCTGATGATGCGAAACGGGCATTAGAAGCACTTAATGGATCGCAACTGGGTTCTAAGCGTATCTACATTGCACGGGCACAGAAGAAGACAGAGCGTGAGGAAGTATTACGTCGACGTTACGAAGAGAAATGTAAAGAGCAGGTCTTAAAATATAAGGGCTCAAATGTGTATGTGAAGAACATTGACGATGGTGTTACTGATGAAGAACTAAGAGAGCTTTTCAGTCCGTGTGGCACCATCACTTCATCAAAACTTATGCGAGATGACAAGGGAATAAACAAAGGGTTTGGATTTGTCTGCTTCTCCAATCCTGACGAAGCTAAAAGAGCCGTGAACAGTTTGCAAGGATATATGTTTCACGGGAAGCCACTCTATTTGGCTATAGCACAAAGAAAAGTGGATAGACAAATGCAACTGAGGAATCAGTTTGCACAACGGATGGCAGCGATGCTAGGACAGTCAACAATTTTTCAGGGTGGATGCACACCTTATTATTACCCAGCACCATGTGTTGTTCCACAAGTTCCATCTCGTTCAGGTTTGACGTTTCAGCCTTTAGGAATGAACCCTGCGTGGAGAGCTAATGCCTTCACATCTCCTGCAAGACCTGCTTTTCAACCTACACCTGTACCTATTATTCCGAATGCTTCGAGGCAACCCAGGCAAAACAGAGGCAAAATAAATGGACCAATGCTTTCTCATCAAAATGGTGTCCAATCTGTCTATTATATGCACAATTCACAAGATGCCCATCAACCAGGAGTTACTGATAAATCATCCGGCAATCAGCAGTGGACCGGACAGGTTAAGTATGTCCCAAATGCTCGCCCATGTGAAAGAAACAAAACTTCTGGAGTCTCAGCTGCCGCTTTTAATTCTGCTGGAGATTCACCTGAATCTCTAGTTGCCAAGGTTGAAGAAGCAGTGCAGGTGCTTAAGATCTCAAAGAGTAAGCTGTCCAACCAAGACTCCGATTTCCATACCGGCTGA 3354 44.54 MEDRNIIKEQSHKPNFAHKSSHFTTQNLQNFTEMRAFSSLILALAAVVLPAAVVYCGFPVPLLSLQRAFPSSRPVQLETLRARDRLRHARMLQGVVDFSVEGSSDPLLIGLYFTKVKLGTPPREFTVQIDTGSDILWVNCNSCNGCPTSSGLGVRVFLFTSSLASVKLPYGLHARVLILVYPVQIQLNFFDASISSSSSLISCSDPICKSAFQTTGTQCLSQSKPCSYTFQYGDGSGTSGYYVSESMYFDMVMGPSMIVNSSATVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGVTPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQTLPIDPSVFATSNNRGTIVDSGTTLAYLVEEAYTPFVNAITAAVSQSVTPTISKGNQCYLVSTSVGEIFPLVSLNFAGSASMVLKPEQYLMHLGFYDGAALWCIGFQKVQEGVTILGGSQAVNVSVTSEKNRFVNAGQLSVSGSTRDKLLQSSTMEALAVDSCNRHRHYSKEGSDYQTSGVRDFPFVMAAVPQTAVHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSATGRSLSYGYVNFMSPQDATNAIEAMNHRMLNGRAIRVMWSRRDPGARKSGIGNVFVKNLSDSINGLGLQELFKKFGNVLSSKVVTSDDGKSKGYGFVQFESEESAKAAIESLNGFTIGDKQIYVGKFIWKSERVLANPDVKYTNLYVKNLDSEIGEEHLQEKFSEFGKISSMIISRDENGMSRGFGFINFVNPDDAKRALEALNGSQLGSKRIYIARAQKKTEREEVLRRRYEEKCKEQVLKYKGSNVYVKNIDDGVTDEELRELFSPCGTITSSKLMRDDKGINKGFGFVCFSNPDEAKRAVNSLQGYMFHGKPLYLAIAQRKVDRQMQLRNQFAQRMAAMLGQSTIFQGGCTPYYYPAPCVVPQVPSRSGLTFQPLGMNPAWRANAFTSPARPAFQPTPVPIIPNASRQPRQNRGKINGPMLSHQNGVQSVYYMHNSQDAHQPGVTDKSSGNQQWTGQVKYVPNARPCERNKTSGVSAAAFNSAGDSPESLVAKVEEAVQVLKISKSKLSNQDSDFHTG 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1095203 1104716 + Cp4.1LG03g01350.1 Cpe03g00220 465937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00220 1117 ProSiteProfiles Peptidase family A1 domain profile. 112 501 IPR033121 -
Cpe03g00220 1117 CDD RRM1_I_PABPs 561 640 - -
Cpe03g00220 1117 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 562 632 IPR000504 GO:0003723
Cpe03g00220 1117 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 844 912 IPR000504 GO:0003723
Cpe03g00220 1117 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 741 809 IPR000504 GO:0003723
Cpe03g00220 1117 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 650 718 IPR000504 GO:0003723
Cpe03g00220 1117 Gene3D Acid Proteases 330 487 IPR021109 -
Cpe03g00220 1117 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 560 1056 IPR006515 GO:0003723
Cpe03g00220 1117 Gene3D - 730 825 IPR012677 -
Cpe03g00220 1117 SUPERFAMILY RNA-binding domain, RBD 840 934 IPR035979 GO:0003676
Cpe03g00220 1117 SUPERFAMILY RNA-binding domain, RBD 731 827 IPR035979 GO:0003676
Cpe03g00220 1117 CDD RRM4_I_PABPs 841 919 - -
Cpe03g00220 1117 Gene3D - 649 729 IPR012677 -
Cpe03g00220 1117 SUPERFAMILY RNA-binding domain, RBD 560 727 IPR035979 GO:0003676
Cpe03g00220 1117 SMART rrm2_1 843 915 IPR003954 GO:0003676
Cpe03g00220 1117 SMART rrm2_1 561 634 IPR003954 GO:0003676
Cpe03g00220 1117 SMART rrm2_1 656 721 IPR003954 GO:0003676
Cpe03g00220 1117 SMART rrm2_1 740 812 IPR003954 GO:0003676
Cpe03g00220 1117 PANTHER RNA BINDING PROTEIN 554 1061 - -
Cpe03g00220 1117 SMART rrm1_1 649 721 IPR000504 GO:0003723
Cpe03g00220 1117 SMART rrm1_1 740 812 IPR000504 GO:0003723
Cpe03g00220 1117 SMART rrm1_1 561 634 IPR000504 GO:0003723
Cpe03g00220 1117 SMART rrm1_1 843 915 IPR000504 GO:0003723
Cpe03g00220 1117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 842 919 IPR000504 GO:0003723
Cpe03g00220 1117 Gene3D - 826 932 IPR012677 -
Cpe03g00220 1117 SUPERFAMILY Acid proteases 109 483 IPR021109 -
Cpe03g00220 1117 CDD pepsin_A_like_plant 112 486 IPR034161 -
Cpe03g00220 1117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 739 816 IPR000504 GO:0003723
Cpe03g00220 1117 CDD RRM2_I_PABPs 646 722 IPR045305 -
Cpe03g00220 1117 Gene3D Acid Proteases 96 329 IPR021109 -
Cpe03g00220 1117 Coils Coil 811 831 - -
Cpe03g00220 1117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 560 638 IPR000504 GO:0003723
Cpe03g00220 1117 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 648 720 IPR000504 GO:0003723
Cpe03g00220 1117 Pfam Xylanase inhibitor N-terminal 112 328 IPR032861 -
Cpe03g00220 1117 PANTHER POLYADENYLATE-BINDING PROTEIN 554 1061 - -
Cpe03g00220 1117 Pfam Xylanase inhibitor C-terminal 346 483 IPR032799 -
Cpe03g00220 1117 PRINTS Pepsin (A1) aspartic protease family signature 376 387 IPR001461 GO:0004190|GO:0006508
Cpe03g00220 1117 PRINTS Pepsin (A1) aspartic protease family signature 118 138 IPR001461 GO:0004190|GO:0006508
Cpe03g00220 1117 CDD RRM3_I_PABPs 738 817 - -
Cpe03g00220 1117 Gene3D - 548 648 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00220 Cpe08g01063 CCT
Cpe03g00220 Cpe08g01063 ECH
Cpe03g00220 Cpe19g00441 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00639 Cpe-Chr1:3684817 Cpe03g00220 Cpe-Chr3:1095203 8.21E-06 dispersed
Cpe03g00220 Cpe-Chr3:1095203 Cpe05g00440 Cpe-Chr5:2526151 0 dispersed
Cpe17g01087 Cpe-Chr17:8241363 Cpe03g00220 Cpe-Chr3:1095203 1.49E-07 dispersed
Cpe16g00494 Cpe-Chr16:5997256 Cpe03g00220 Cpe-Chr3:1095203 3.19E-142 wgd
Cpe19g00441 Cpe-Chr19:3927821 Cpe03g00220 Cpe-Chr3:1095203 1.32E-169 wgd
Cpe03g00220 Cpe-Chr3:1095203 Cpe08g01063 Cpe-Chr8:8099955 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00220 K13126 - csv:101203793 917.146