Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00222 ATGGCGTCGAAGGAAATGAAGAAGGAGAGAGCAGAGGTAGCGGCGAGGCTTGCTGCTTCCGATCTCAGAGACATTAACAGAGACGAGGAGCAGCACGCAGCGGCGCCTGGAACCGAGAAAAAAGCCACGGTGGAGGTCGTGGAGACGGACCGGGCGGCGGCACATGATCAGCAGCAGAGGTCCGGCGTGATTGGATCTGTACTGAAGGCGGTGCAGGACACGTATGAACACGCGAAGGAGGCGGTGGTTGGGAAGAGCCAGGAAGCGGAGGAGAGAGGTCAGGAGGTGAAGGACGCGTCGGCGGAGAAGGCAAGAGAGACGACAGAGGAGGCGAAGAGGAAAATGGACGAGTATGGAAGTGCAGCGGCAGAGAAGGCGAGGGAGACGAAGGAAGCCACCGGCGATACGGTGGCGTCGGCGAGAGGGAAAATGAGTGAATATGGAGAGAAAACGAAGGACAAGACAGGCGAATACACAGATTATGCGGCGGATAAGGCGAGGGAGACGAAGGACGCGGCGGCAAGAAAAGCAGGGGAATACAAAGACTATACAGCGGAGAAGACGACGGAGGCTACAGAATCCGCAAAAGGAAAGGCCGGCGAGTATAAGGATTACGCAGCGGAGAAGGCGAGGGAAGCAAAGGACGCTGCGGCGAGAAAAGCAGGGGAATACAAAGATTACACAGCGGAGAAGGCAAAGGAAGCGAAGGACGCTGCGGCTAGAAAAGCAGGGGAATACAAAGATTACACCGCGGAGAAGACTAGGGAAGCGACAGAATCGGCGAAGGGGAAGGCCGGTGAGTACAAAGATTTCGCGGCAGAGAAGGCGAATGAAACGAAGGAGAAGGCAGCAGAGTACAAGGATTACACGGAGGAGAAGGCGAAGGAGACGAAGGATGCAGCGGCAAGGAAGGCAGGGGAATACAGAGACTATACAGCGGAGAAAGCGAGAGAGACATCGGAGTACACGGCGGAGAAGGCTAAAGAAGGAAAGGACACTACAGTAAGCAAACTCGGGGAATTGAGAGATTCAGCGGCGGATGCTGCAAAGAGAGCCATGGAGTACTTATCTGGAAAGAAAGAGGAAGCCAAGGAGAAATCTTTCGAGACTAAAGAAGCCGCCAAGGAAAAGATGGGCGAATCGGAGGAGGCCGCGAGGAGGAAGATGGAGGAGCTGAGGCTGCAGGGAGGAGGGAGCGACAGAGAAGAAGCAAAAGTGACATTAGAGCGTAATAGAGGCAGTGGCGGGAAGGGGGGAGACACGGTGGTGGTAGGGATGGAGGAGACAAGGCCGGGGGCGCTGGCCTCGACTTTGAAGCAGGCGGACGACATGGCGGGGCAGACTTTCAACGACGTTGGTCGAATGGACGAGGATCGTTCGAAGGATCGTCAGGGAAAAATGACTGAGCTGTGTCGCTTCAGTGGCTCCAAGATATACCCAGGGAGGGGCATCAGATTTATCCGGGCTGATTCTCAGGATATTGCTCAAGAGGCGGTGAAGAAGAGGAGACGTACCACCAGGAAGCCATACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGAGCCGAAAAGCCAGAAGTGCGTGATGCTGCCAGAGAAGCTGCTCTGCGGGAAATTAAGGAAAGAATCAAGAAAACAAAGGACGAAAAGAAGGCCAAGAAAGCGGAAGTGTTAGCCAAGTCCCAGAAGGCGCCAGGTAAGGGTAACGTTGCCAAGGGACCTGCATCCAAAGGTCCAAAGCTCGGTGGTGGCGGTGGGAAGCGTTGA 1782 55.05 MASKEMKKERAEVAARLAASDLRDINRDEEQHAAAPGTEKKATVEVVETDRAAAHDQQQRSGVIGSVLKAVQDTYEHAKEAVVGKSQEAEERGQEVKDASAEKARETTEEAKRKMDEYGSAAAEKARETKEATGDTVASARGKMSEYGEKTKDKTGEYTDYAADKARETKDAAARKAGEYKDYTAEKTTEATESAKGKAGEYKDYAAEKAREAKDAAARKAGEYKDYTAEKAKEAKDAAARKAGEYKDYTAEKTREATESAKGKAGEYKDFAAEKANETKEKAAEYKDYTEEKAKETKDAAARKAGEYRDYTAEKARETSEYTAEKAKEGKDTTVSKLGELRDSAADAAKRAMEYLSGKKEEAKEKSFETKEAAKEKMGESEEAARRKMEELRLQGGGSDREEAKVTLERNRGSGGKGGDTVVVGMEETRPGALASTLKQADDMAGQTFNDVGRMDEDRSKDRQGKMTELCRFSGSKIYPGRGIRFIRADSQDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 593
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 1108259 1112135 + Cp4.1LG03g01320.1 Cpe03g00222 465939
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00222 593 MobiDBLite consensus disorder prediction 20 36 - -
Cpe03g00222 593 Gene3D - 504 566 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 360 410 - -
Cpe03g00222 593 Gene3D - 93 147 - -
Cpe03g00222 593 Gene3D - 286 333 - -
Cpe03g00222 593 Gene3D - 220 285 - -
Cpe03g00222 593 Gene3D - 148 199 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 288 342 - -
Cpe03g00222 593 Coils Coil 346 366 - -
Cpe03g00222 593 Gene3D Ribosomal protein L24e 467 503 IPR038630 -
Cpe03g00222 593 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 261 319 - -
Cpe03g00222 593 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 310 460 - -
Cpe03g00222 593 Coils Coil 371 395 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 548 593 - -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 205 246 IPR004238 -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 143 180 IPR004238 -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 225 257 IPR004238 -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 287 319 IPR004238 -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 247 285 IPR004238 -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 181 224 IPR004238 -
Cpe03g00222 593 Pfam Late embryogenesis abundant protein 321 352 IPR004238 -
Cpe03g00222 593 PANTHER EMBRYONIC PROTEIN DC-8-LIKE 1 261 - -
Cpe03g00222 593 Coils Coil 541 565 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 20 43 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 81 134 - -
Cpe03g00222 593 PANTHER DAUER UP-REGULATED-RELATED 261 319 - -
Cpe03g00222 593 PANTHER DAUER UP-REGULATED-RELATED 310 460 - -
Cpe03g00222 593 PANTHER DAUER UP-REGULATED-RELATED 1 261 - -
Cpe03g00222 593 Pfam Ribosomal protein L24e 468 496 IPR000988 -
Cpe03g00222 593 Coils Coil 101 121 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 81 151 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 548 565 - -
Cpe03g00222 593 MobiDBLite consensus disorder prediction 360 423 - -
Cpe03g00222 593 ProSitePatterns Ribosomal protein L24e signature. 473 490 IPR023442 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01301 Cpe-Chr3:10560891 Cpe03g00222 Cpe-Chr3:1108259 1.66E-06 transposed
Cpe10g00257 Cpe-Chr10:1544459 Cpe03g00222 Cpe-Chr3:1108259 9.13E-46 wgd
Cpe19g00446 Cpe-Chr19:3965006 Cpe03g00222 Cpe-Chr3:1108259 5.59E-46 wgd
Cpe03g00222 Cpe-Chr3:1108259 Cpe08g01058 Cpe-Chr8:8069854 1.21E-49 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00222 - - cmo:103486554 541.191