Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00223 ATGGAATGGGCCACCGGAAGTTTCAGACCCTTTCTTTCTCGGCCACCGGAATCTTCCTTTGGCTTTCTCTATAACTATAATCTTGAACAATATCAGGGCATCGATGTGAAGCATTCGGCCATGGCGGGGACGTCTGAGACCGTGCTCCAAGGGCTGGTTCCAGGGATGGATATGAATAGCTATGGAAATTTGGATAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGAGTCGCTCGAACGTAGCTTCCAGGAGGAGATCAAGCTCGATCCCAATCGGAAGCAGAAGCTGTCGAAGGAGCTCGGTCTGCAGCCGCGCCAGATCGCCGTTTGGTTTCAGAACCGCCGTGCGAGGTGGAAGGCGAAGCAGCTCGAGCATCTCTACGATACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACACAAGCTTCAAGAGGAGGTAATAAAGCTGAGGAGTATGCTGAGAGAGCTTCAAGCTGCAAGGAACCAAGTATCGACGGTGTACACTGACTTGTCGGGCGAGGAGACGGTGGAAAGCACCTCCGTCGGAGCTGGCTGCTCGAGCAAGCCAAGAGCGGTGGCAACAGCAGCAGCAAACCAGTACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACAGAGGAATACAACCCCATGTCTCCAACTTTCTGGGGCTCTCTGCCACCCACATATCATCCCCAGTAG 711 53.45 MEWATGSFRPFLSRPPESSFGFLYNYNLEQYQGIDVKHSAMAGTSETVLQGLVPGMDMNSYGNLDKKKRLSSEQLESLERSFQEEIKLDPNRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVIKLRSMLRELQAARNQVSTVYTDLSGEETVESTSVGAGCSSKPRAVATAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGSLPPTYHPQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1113229 1115138 - Cp4.1LG03g01240.1 Cpe03g00223 465940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00223 236 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Cpe03g00223 236 CDD homeodomain 66 122 IPR001356 GO:0003677
Cpe03g00223 236 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Cpe03g00223 236 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 220 IPR045224 GO:0003700
Cpe03g00223 236 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Cpe03g00223 236 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Cpe03g00223 236 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Cpe03g00223 236 Coils Coil 113 164 - -
Cpe03g00223 236 Gene3D - 60 135 - -
Cpe03g00223 236 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 220 - -
Cpe03g00223 236 SUPERFAMILY Homeodomain-like 55 123 IPR009057 -
Cpe03g00223 236 SMART HOX_1 65 125 IPR001356 GO:0003677
Cpe03g00223 236 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00223 Cpe08g01057 CCT
Cpe03g00223 Cpe10g00259 CCT
Cpe03g00223 Cpe19g00447 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00223 Cpe-Chr3:1113229 Cpe10g00259 Cpe-Chr10:1554694 7.69E-51 dispersed
Cpe10g00258 Cpe-Chr10:1547782 Cpe03g00223 Cpe-Chr3:1113229 9.28E-67 wgd
Cpe19g00447 Cpe-Chr19:3966973 Cpe03g00223 Cpe-Chr3:1113229 1.61E-52 wgd
Cpe03g00223 Cpe-Chr3:1113229 Cpe08g01057 Cpe-Chr8:8066394 6.18E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49147 PF00046 Homeodomain 2.40E-17 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00223 - - csv:101221983 436.802