Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00226 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAGCGACGACCACCACCACCACCACCAACAACACCACCAATCTACCGCCAACCACCATCATGTACCAACTCCTAACCACATCCATCAATCCTATGCTCCTCACCGCTTCACGCCTCGAGCGTCTTCTGTTCACGCGTCTCCACCGCCGCCTCCCAATCAACCGGCTCAACCTATTCTAGCGCCGTCCGGAAGTCCGAAGAAGATCGGCGGCCCGATAGATGAGGAGGAGGAGGAAGACGATGGGGAGGATTATGGTGATGCTGCTTTCTGCTCCAGTTCGTTTGATAATGGAGATCCGAATCGGCTTGGTGTTGGTGTTGATGTGCGGGTGGAGAAGAGGAAGGATCAGTCGGATGAGCTTGGGGAGGAAGGAGGTTCTTTTAGTTATAAAAGAGCGAAGCCTTCCTCCAGTGGCGGAGAATACAGGAAGGATCGAGAGGAGTGGAGCGATGCGGCTATCTCCTGCCTTCTGGACGCGTATACCGAGAAATTTACGCAGCTGAATAGGGGAAATTTGAGGGGGAGGGACTGGGAGGAAGTGGCTGCAACTGTCAGTGAACGGTGCGAGAAGCAGAGCAAGAGCGTAGAACAGTGTAAGAACAAGGTGGACAACTTAAAAAAGAGGTATAAGTTGGAGAGGCAGAGGATGAGTAGCGGTGGCGTTTCGATCAGCCACTGGCCTTGGTTCAAGCAGATGGAGCAGATTGTTGGAAATTCTTTGACAATGAAGGTTGTGTCTGACGATGATCGGAGTGTGGCTTCATCAGGGAATACTCCGAGGATGTCAAAGAGGTATGTTCTTCCCACACCCAATACTGCTGGTCACATGAATAATGTAAAACCCAAAGCAGTTACCAGTCCAAGGTGGCGAAGAGTCGTCTTTAAAATCAGTGGTGCAGCTCTTGCAGGGACTGGTCCTAACAACATCGACTCGAAGGTTGCAATGGCAATCGCCAGGGAAGTTGTAATGGCCTGTCGCCTGGGTGTGGAGGTGGCAATTGTTGTTGGAGGTCGAAACTTCTTCTGTGGAGACTCTTGGGTGACTACAACAGGTTTAGATAGATGTACAGCATACCAAATTGGTATGATGGCTACCGTTATGAATTCAGTACTTCTCCAATCAGCAATAGAGAAGATGGGAGTTCAAACTCGTGTCCAATCTGCATTTATGCTTCAGGAGGTTGCTGAACCATACAATAGGCAACGTGCTATAAGGCATCTTGAGAAAGGCAGAGTAGTTATATTTGGTGGCATTGGTGCTGGCACTGGAAATCCCCTATTTTCCACTGATACAGCTGCGGCCTTTCGAGCTTCTGAGATTCATGCTGAGGCAGTTCTTAAGGGTACAAATGTTGATGGGGTGTATGACTGCAATTCGCATGACAGCAATTTTACATTCAAGCACATCTCTTTCAGGGAGTTAGTATCAAGAGGTGCCATTAGCATGGACATGACAGCATTAACTTTCTGCGAAGAGAACAACATTCCCGTTGTGGTCTTTAATCTTCTTGAGCCTGGAAATATCTCAAAAGCTTTATGCGGAGATCCAGTGGGTACTCTGATTGATCAAAATGGAAGAATTAGCTAG 1620 48.64 MASCDDDFSLLSDDHHHHHQQHHQSTANHHHVPTPNHIHQSYAPHRFTPRASSVHASPPPPPNQPAQPILAPSGSPKKIGGPIDEEEEEDDGEDYGDAAFCSSSFDNGDPNRLGVGVDVRVEKRKDQSDELGEEGGSFSYKRAKPSSSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERQRMSSGGVSISHWPWFKQMEQIVGNSLTMKVVSDDDRSVASSGNTPRMSKRYVLPTPNTAGHMNNVKPKAVTSPRWRRVVFKISGAALAGTGPNNIDSKVAMAIAREVVMACRLGVEVAIVVGGRNFFCGDSWVTTTGLDRCTAYQIGMMATVMNSVLLQSAIEKMGVQTRVQSAFMLQEVAEPYNRQRAIRHLEKGRVVIFGGIGAGTGNPLFSTDTAAAFRASEIHAEAVLKGTNVDGVYDCNSHDSNFTFKHISFRELVSRGAISMDMTALTFCEENNIPVVVFNLLEPGNISKALCGDPVGTLIDQNGRIS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1125429 1130122 + Cp4.1LG03g01290.1 Cpe03g00226 465943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00226 539 CDD AAK_UMPK-PyrH-Ec 301 533 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cpe03g00226 539 Pfam Amino acid kinase family 302 512 IPR001048 -
Cpe03g00226 539 Gene3D - 291 538 IPR036393 -
Cpe03g00226 539 MobiDBLite consensus disorder prediction 54 69 - -
Cpe03g00226 539 Hamap Uridylate kinase [pyrH]. 298 533 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cpe03g00226 539 MobiDBLite consensus disorder prediction 116 137 - -
Cpe03g00226 539 Gene3D - 159 222 - -
Cpe03g00226 539 PANTHER URIDYLATE KINASE 1 539 - -
Cpe03g00226 539 MobiDBLite consensus disorder prediction 261 291 - -
Cpe03g00226 539 MobiDBLite consensus disorder prediction 1 154 - -
Cpe03g00226 539 Coils Coil 199 226 - -
Cpe03g00226 539 Pfam Myb/SANT-like DNA-binding domain 156 246 IPR044822 -
Cpe03g00226 539 MobiDBLite consensus disorder prediction 261 290 - -
Cpe03g00226 539 SUPERFAMILY Carbamate kinase-like 298 532 IPR036393 -
Cpe03g00226 539 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 539 IPR011817 GO:0006221|GO:0009041
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00226 Cpe08g01054 CCT
Cpe03g00226 Cpe08g01054 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00226 Cpe-Chr3:1125429 Cpe19g00537 Cpe-Chr19:4552220 4.21E-94 dispersed
Cpe08g00418 Cpe-Chr8:2676448 Cpe03g00226 Cpe-Chr3:1125429 1.04E-14 dispersed
Cpe17g01104 Cpe-Chr17:8392103 Cpe03g00226 Cpe-Chr3:1125429 5.35E-14 dispersed
Cpe03g00226 Cpe-Chr3:1125429 Cpe08g01054 Cpe-Chr8:8044214 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49149 PF00696 AA_kinase 1.90E-25 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00226 - - csv:101222460 971.459