Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00237 ATGGAAATGCCCGGCAGGAGATTGAACTACACGCTTCTCAGTCAAATTCCAGACGACCAGTACAGTGGAGGCGTTGCTGTGGCTGGAGCCGGAGCTTCGACATCGTTGATAGAAACATCATCAGGAGAGGGGAAGAACGACAGGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCGGGTGGTGATCACAGGGCGGGCCAGCAGCAGCAGGTTAATTGGATCGGTAATATGTACTCAACGTTTGGTTTGCAGAGGCAGTCTAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTACTACGCACCGACACCATCGACTACAGTGGCTAACGAGACGGATGCGTTTGGGTGTACGCACGATGATGTGCTTAGGATTGGAGGCGATTCGAGACCACAGACAGCCGAGATGGCCGCTGGGACTGGAGGATCTTCTAGTAAGAGCTGGGCGCAACAGACGGAGGAGAGTTATCAACTGCAGCTGGCATTGGCGCTTCGGCTTTCATCTGTGGCGACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATTAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGCCTATCATACTTCGACAAGGTTCCTGATGGGTTTTATTTAATCCATGGAATGGATCCATATGTATGGACTGTATGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACTGATTCTTCAATTGAAGTTGTTCTGATTGATCGGCGCACTGATCCCAACTTAAAAGACCTCCAAAATTGGGTCCAAAACGTTTCTTGCACCTCTATAACCACAGAAGAGGTTGTAAACCAGCTTGCTAAACTTGTCTGTAGGAGTTTGGGTGGCTCAGTTTCTGGAGAAGATATGTTGGAGCCGATATGGAGGGAGTGTAGTGATAACTTGAAGGAGACCTTAGGCTCAGTGGTTGTTCCTCTTGGTGGACTCTCTGTAGGACTCTGCCGGCATCGTGCACTTCTTTTTAAAGTGTTAGCTGACACAATTGATTTACCCTGTCGTGTAGCCAAGGGCTGTAAATATTGCTCACGCCATGATTCTTCTTCTTGTCTTGTTCAGTTTGGGCTTGACAAGGAGTATCTGGTTGACTTGATTGGAAATCCTGGTTGCTTGTATGAGCCTGATTCTTTGCTCAATGGCCCATCCTCCATTTTGATCTCCTCGCCGTTGCGACTTCCACGACTAAAGCCAGTAGAGCCGGCTATTGATTTCAGGTCACTGGCTAAACAGTACTTTTCAGATTGCCAATTGCTTAATGTTGTTTTCGATGAAGCTTCCTCATGTAATTACTCAGAAAATACAGTGGACGGAGAAGATAGCGCACTCCCCTTGTATCTAAAGCAGTTTGATAGAAAGTTCACTAACAGAAGCAACCAAATGCTTGTCCCTGGTGAAAATGATGAAAAATCCATTTTACTGCATGCAAAAACTTCGCAGCCTAATTCCCAAGACAGAGATTTCCAACTACTTAAAATGCGTGATAATTCTCATAATGCTATACAACCAACTGTGCTGGTTGAGGATTCAATCCCACTGAAGTACGTTCCACATATTAGCCGTGGAAGTGCGCAGTCATATTTGGATATGTCCCACCCAAGGATGGATTCTACTATGGACGTAAGGTTTCAACAGGGAGGTCAGCTAATACCAAGCACACGGAGTAACACACTTCCCCTTGGTGCAGAGGATTTGGACATTCCATGGAATGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTTCCTTCGGAACTGTGCATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTAACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATCATGAAATCCTTACGACATCCTAATATTGTACTGTTTATGGGTGCCGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCATAAGTCAGGTGTCAAAGACATTGATGAAACACGTCGGATAAATATGGCTTTTGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGATCCTCCAATTGTTCATCGCGATCTAAAATCACCGAATCTTTTAGTTGACAGGAAGTATACAGTAAAGGTTGTTGCAGCTGTTGGATTTAAGGGCTTAAGGCTTGAAATCCCACGTGATGTAAATCCCAAATTGGCTTCCTTAATAATGGCTTGCTGGGCCGATGAGCCCTGGAAACGTCCATCTTTTTCCAGCATAATGGAGACCTTGAAGCCAATGACTAAACAAGCACCGCCTCAACAAGGTCGTGCTGACACACTCTCAGTTATGTGA 2424 45.59 MEMPGRRLNYTLLSQIPDDQYSGGVAVAGAGASTSLIETSSGEGKNDRRKLERGLDWEAGGDHRAGQQQQVNWIGNMYSTFGLQRQSSGSSFGESSISGEYYAPTPSTTVANETDAFGCTHDDVLRIGGDSRPQTAEMAAGTGGSSSKSWAQQTEESYQLQLALALRLSSVATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYFDKVPDGFYLIHGMDPYVWTVCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDRRTDPNLKDLQNWVQNVSCTSITTEEVVNQLAKLVCRSLGGSVSGEDMLEPIWRECSDNLKETLGSVVVPLGGLSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSRHDSSSCLVQFGLDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRLPRLKPVEPAIDFRSLAKQYFSDCQLLNVVFDEASSCNYSENTVDGEDSALPLYLKQFDRKFTNRSNQMLVPGENDEKSILLHAKTSQPNSQDRDFQLLKMRDNSHNAIQPTVLVEDSIPLKYVPHISRGSAQSYLDMSHPRMDSTMDVRFQQGGQLIPSTRSNTLPLGAEDLDIPWNDLVLKERIGAGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAFDVAKGMNYLHRRDPPIVHRDLKSPNLLVDRKYTVKVVAAVGFKGLRLEIPRDVNPKLASLIMACWADEPWKRPSFSSIMETLKPMTKQAPPQQGRADTLSVM 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1177932 1188255 + Cp4.1LG03g01330.1 Cpe03g00237 465954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00237 807 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 138 741 - -
Cpe03g00237 807 Gene3D Phosphorylase Kinase; domain 1 594 678 - -
Cpe03g00237 807 Pfam Ethylene-responsive protein kinase Le-CTR1 197 401 - -
Cpe03g00237 807 Gene3D Transferase(Phosphotransferase) domain 1 744 805 - -
Cpe03g00237 807 CDD STKc_MAP3K-like 607 787 - -
Cpe03g00237 807 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 740 801 - -
Cpe03g00237 807 SMART serkin_6 601 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00237 807 SUPERFAMILY Protein kinase-like (PK-like) 581 787 IPR011009 -
Cpe03g00237 807 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 740 801 - -
Cpe03g00237 807 Pfam Protein tyrosine and serine/threonine kinase 602 741 IPR001245 GO:0004672|GO:0006468
Cpe03g00237 807 ProSitePatterns Protein kinases ATP-binding region signature. 607 628 IPR017441 GO:0005524
Cpe03g00237 807 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 138 741 - -
Cpe03g00237 807 Gene3D Transferase(Phosphotransferase) domain 1 679 743 - -
Cpe03g00237 807 ProSiteProfiles Protein kinase domain profile. 601 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe03g00237 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 721 733 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00237 Cpe08g01046 CCT
Cpe03g00237 Cpe10g00265 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00237 Cpe-Chr3:1177932 Cpe06g00457 Cpe-Chr6:2662617 4.50E-11 dispersed
Cpe10g00265 Cpe-Chr10:1584095 Cpe03g00237 Cpe-Chr3:1177932 0 wgd
Cpe03g00237 Cpe-Chr3:1177932 Cpe08g01046 Cpe-Chr8:7996171 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62271 PF14381 EDR1 6.10E-78 CL0125 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00237 K14510 - csv:101208452 1318.91