Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00240 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCTTCGACTGGCCGATGAGGCTGACCGCGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAGTTGTTTCCGGAACCAATATCGCTCAATCCAGATTTCGAGCAAGCGATAGGGATCCGGGAAGCAGTGATTCTGGTCGAGTGGGGTATCAGCCTCAGCCGCCGCAGCATCAGGAGCTTGTGAGCCAGTACAGGACAGCCCTTGCTGAGCTGACTTTCAATTCCAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCGATCTCTGCCACTATTTGTGCCAACATTCTCGAGGTTCCCACTGAGCAGAAGCTGCCATCACTTTATCTATTGGACAGTATTGTAAAGAATATTGGAAGAGATTACATAAAATACTTTGCAGCAAGACTACCGGAGGTATTTTGCAAAGCTTATAGGCAAGTCGACCCATCTGTTCATACAAGCATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACTCTGCAGATTATCGAGAAAGAACTTGGTTTCGTGTCTAGCGGTAGTTCTTCTTCTGGGACCATAACCTCGAAGCCAGATTTGCAGGCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATTGAGAGGCAACGCCTTCAGCAGTCAGGCAGGGTGAAAGGAATGACTAGTGATGGTACTGGCGCAACAACTGTAACTCAGGATGTCGCCCAAGCCAAAATTAGTTCTGGACGCCCGTGGGCGGACACACCAATTAAAGGGCTTGATATTCAGCGTCCACTTAGAGATGCACCAAACGATTTGGCACAAGAGAAGAACGTCGCCGCTGCATATCTAGACTATGAATGTGGTTCTGATCTTTCAAGGACATCAGGTGTTGGAAGGAGGGTCGTTGATGAAGGGCAAGACAAATCTTGGTCTTTAGCTGGAAACAATTTGGCTGAGAAATTATCTGGACAAAGAAATGGGTTCAACAACAAGCTTGGATATGAAAATTACCCTGCACCCAAGTCTGCAAACACTGGTGCACGTCTACTGCCCATGCAAAAATTTTCAAGCGGCAGCAGCAACAGAGTGTTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCACCTGCCATCGCCAGTGGCACCGGGAAAGATCAATGTACTCCTGAGGATTCGGATAATTCGGGTACTGACAATAAGCCATTAAGCATACGGGATACTGGGGCAAGTGTTGATAGGGAAGCTTCCTTTGATTCACAATCATCTGAGCAGAGAGAACTAGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAGTTCCAGGAGGCAATATCTCTGGATGGGCTGAGAGGCAGGGTTCCTAGAAAGAATTCAGCTCAATCAGGAGGTTATGGTGCCACTCTAACCGCAATGTCAGGTGCTAACTCTTCTGTGGATCAAATGGGAGGACGATCACAGATCACATCATCTAATATTGGAGCTTCAGGACATGGGTTTCTGAATAAAGGAGGTTCAGGGTCCCTTGGGACTGTAGGCCATCCAAGATTTCCATCACAAAGTGTTGCATTACCATCTGGACAGCCACCCTTGAACCAGCGCCCCCCTTCACCATTAGTGGATCATGTCGCTCATAAAAAACAAAGCCATAAAACTTCATTTCCTAATCTTGACCCACGTAGAAGGCATATACGGGATGCTGCCCTTGGCCTGCATCCCAACATTCGGCCAGATAACCTTCAAAAACCACAGCCTCAGGACCTACAAGCTTCAGCTTCATCTATACCTGCTTCTCAAACCAGGCACCGGTCACTGAAACCTGAAGTCACACAGTCGGAACTTTCTAGTCAGCATGCAGTATCAATTCCGGACACCGATTTTGGACCGCCCTCATCGGCTGGGACAGTTCTAGAAGTCTTACCTGCAGAAATTTTGGGAGAGCCAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAAAGTGGAATTTTGTCCAACCATTCAATAATCAGTAGCATGCAACAGAATTTCAGCTCCCAAGATGTGGGAAATATGCAACCCCGTTCAAGCGTCAACCCTCCTCTACCAAGTCAGTCTTCTCCTGCCCATACTCAGTCTACATTCTCAGAGCCAAAGACTGTGGGCGAATCTTCATTAGGTCCTCCATCTCTTGAAAGCACATCAACGCTGGTTAAGTTATCTCAGAGTAAGGTAGAAGACACACCGTTGCCATCTGATCCACTTCCTTCTCCATCTACTATGAATAGTGCATCCACTGAAACTTCAAATGTGGTAAACGATGATTCTAGTCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTCATATGTGCTTCTAAAGGAGAATTAGCAAGTAACGTTACATCCCAGATGCCTTCACAGCCTGAAAATTTGAAGTCAGGTGATGTTGTGACTTGTTCTATACCAGTTCCTTCCATCCCTATTCCCTCTTCCAGTCAATCATCTATAAGACCTGAATCACCTTCAAAAGCTGCTGCTAAGAGCTCCACTACTCCACCTCCATCTGCCACAACTGAGATAAACAACCTCATAGGCTATGAGTTTAGTTCACATGTTATTCGCAAATTTCATCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATTTCAATGTAAGATCTGCGGTCTTAGACTGAAATGTGAAGAACAGTTGGATACGCACTTGTGGTGGCACATGTCAAGAACTGAGTCAAACAATTCATGTAGGGCACCAAGAAGATGGTATCCAAGTTCAGTTGATTGGGTATCTGGAAATGCTAGACTTCTACTTGACGCTGCCACTTCTCTGGACAAGTCCAGCATGATGGAAGAAGATAACGAGCCAATGGTTCCAGCAGATGAAGACCAATTTGCCTGTGTTTTATGTGGTGAGCTTTTTGAAGATTTTTATAGTCAAGAGTTGGGTAAGTGGATGTTCAAAGGAGCAATGCATATCACCATCCCATCAGTGGGTAGTGAGGTAGGAAGCACAAATGAACGAGTTGCTATAGGACCCATTGTGCACATAAGTTGCTTCACTGAAAGTTCAATACACGAGAAACGGATGTATGATGCTTCCCTGCAAAACGTAATACTGGAACTACTCTGGGGGCATCCTGCTCGTGCAATTGGCATGGGGATGCGGAAAGGGAGTATGGATATGAGTGCTTCGCTCGTGGTTAGATTGGTTGAGCAAGAGATTATAGGGAGTGGTAGCTCTAATACTGGTATTTTCTAG 3378 46.15 MEMESSRRPFDRTREPGLKKLRLADEADRGGNINGRPFPQRPVVSGTNIAQSRFRASDRDPGSSDSGRVGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATICANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHTSMRHLFGTWKGVFPPQTLQIIEKELGFVSSGSSSSGTITSKPDLQAQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDGTGATTVTQDVAQAKISSGRPWADTPIKGLDIQRPLRDAPNDLAQEKNVAAAYLDYECGSDLSRTSGVGRRVVDEGQDKSWSLAGNNLAEKLSGQRNGFNNKLGYENYPAPKSANTGARLLPMQKFSSGSSNRVLSTNWKNSEEEEFMWGEMNSMLTGHGAPAIASGTGKDQCTPEDSDNSGTDNKPLSIRDTGASVDREASFDSQSSEQRELGDSGQQRSSMWQFQEAISLDGLRGRVPRKNSAQSGGYGATLTAMSGANSSVDQMGGRSQITSSNIGASGHGFLNKGGSGSLGTVGHPRFPSQSVALPSGQPPLNQRPPSPLVDHVAHKKQSHKTSFPNLDPRRRHIRDAALGLHPNIRPDNLQKPQPQDLQASASSIPASQTRHRSLKPEVTQSELSSQHAVSIPDTDFGPPSSAGTVLEVLPAEILGEPSTSSLLAAVMKSGILSNHSIISSMQQNFSSQDVGNMQPRSSVNPPLPSQSSPAHTQSTFSEPKTVGESSLGPPSLESTSTLVKLSQSKVEDTPLPSDPLPSPSTMNSASTETSNVVNDDSSPISNLLSSLVAKGLICASKGELASNVTSQMPSQPENLKSGDVVTCSIPVPSIPIPSSSQSSIRPESPSKAAAKSSTTPPPSATTEINNLIGYEFSSHVIRKFHPSVISGLFDDIPFQCKICGLRLKCEEQLDTHLWWHMSRTESNNSCRAPRRWYPSSVDWVSGNARLLLDAATSLDKSSMMEEDNEPMVPADEDQFACVLCGELFEDFYSQELGKWMFKGAMHITIPSVGSEVGSTNERVAIGPIVHISCFTESSIHEKRMYDASLQNVILELLWGHPARAIGMGMRKGSMDMSASLVVRLVEQEIIGSGSSNTGIF 1125
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 1194792 1202310 + Cp4.1LG03g01150.1 Cpe03g00240 465957
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00240 1125 SUPERFAMILY ENTH/VHS domain 77 200 IPR008942 -
Cpe03g00240 1125 Gene3D - 72 202 IPR008942 -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 411 475 - -
Cpe03g00240 1125 SMART 558neu5 80 202 IPR006569 -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 452 475 - -
Cpe03g00240 1125 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1064 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 713 806 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 542 667 - -
Cpe03g00240 1125 Pfam CID domain 87 195 IPR006569 -
Cpe03g00240 1125 ProSitePatterns Zinc finger C2H2 type domain signature. 925 945 IPR013087 -
Cpe03g00240 1125 CDD CID_Pcf11 82 194 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 860 889 - -
Cpe03g00240 1125 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 713 778 - -
Cpe03g00240 1125 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1064 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 578 607 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 208 222 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 208 227 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 787 806 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 617 660 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 1 76 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 424 443 - -
Cpe03g00240 1125 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe03g00240 Cpe08g01043 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00240 Cpe-Chr3:1194792 Cpe20g00378 Cpe-Chr20:2128870 3.03E-34 dispersed
Cpe03g00240 Cpe-Chr3:1194792 Cpe08g01043 Cpe-Chr8:7981994 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00240 K14400 - csv:101223169 1667.51