Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g00245 | TTTTTAATTTTCCATTTTTTTTTTAATTTTTTTTTTTTTCTTCACCTCTTCTTTTTATCTCACACTCTCAAGCTTCCCATGGAAATGGATGATCAATATGCCCTCTCCGATCTCCGCCACCTCATGACTACACCTCCATCTCGCTCCCATTTCCCCTCTTCTTCCTCAATTCCCCACCATGATCTCTTCTCCTCTTCCTCCACTTCCTCCCCCGCCGCCGCCTTCCGCCACCACCACCACCACCATCATACCCCTTACGACCTCATCATGATGATGCCACGTGATCCTCTCCCCGACTTCCGCTCCGATTCCACTGCCACGCCCCCTGCCGTCGTCTCCGCTCCAACAGCTCCCACTGCCTTCGAACTCGAAACTGCCTCACTCGCTGCCGACTGCGCCACGCCCCGATGGCCTCGCCAGGAAACTCTCACTCTCTTGGATATCAGATCTCGACTCGATTCTAAGTTCAAAGAAGCCAACCAAAAAGGACCCCTTTGGGATGAAGTTTCAAGAATCATGGCTGAGGAACACAATTATCAAAGAAGTGGGAAAAAATGCAGAGAAAAGTTTGAGAATTTGTATAAATATTACAAAAAGACAAAGGAAGGCAAAGCTGGAAGACAAGATGGTAAGAACTACAGATTCTTCAGGCAGTTGGAAGCTCTCTATGGTGAAACAACCAATTCAGCTCAACTTCCAGATTCCCATTTTGTTGGAGACAGCAACCTTAGCTTCCAACAAAATGGGACTAACAATCCGACCACCGCTCTACCAATGAGCTACGAAGCTCAACAGAAGCATTACTGTGACAGCCTCAGCCTCTCTAACACGTCCGAGTTTGAAACCTCAGCCTCGTCTGATGACAACGATGACCTCGGCTCGGTTGGCATTATGGACAACGATTCGGTCGAGAAGAGACGGAAACGACGAGGCGGGAAATGCTGGAAGGCGAAGATCAAACAGTTTATCGACTCGCAAATGAGGAAGCTCATTGATAAACAAGAGGCTTGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAAAAGGATAGAATGATTCGTGAGGAGGAATGGAGGAGACAAGAAGTGTCGAGGATGGACCGAGAGAGGAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAGGCTAGAGATGCAGCATTAATGGAGGCATTGCAAAGGCTAACGGGACGAGAATTGAGAGACTACAACTCGTCGCCCGACCACGGATTAATCGCACCGGAGCGTCATCGGAATAACAGCGATAACCAAAACGAAGACGGGAGCGAAATACTAAACAACAACACCGGTAGAGAACTAGTAGACAACAATAATTACCAAAGGAAAACAATAGATGAAGGCAACAAGAAACGCAAGGAGAATTCAAGATCAGCCACCACCTACAATCTTTACTTCCAAACAGATTCCTCCCTCTACAGCGGCGGAGGACCCTGCGGCGGTGGTGCCGAGATCAAAGAACAAAGTCCTAACAGCTCGAACGCTGGCGGTGGGGGCGGCGGGGGTAGTGGCAGCCATGTGGTGCAAGATAGTTGCTTTCGGTTCTTGATGGGTGAAGGTGATCAGTCTCAATCTGGTTTGTGGGAAAATTTTGGTCTGAAACTCAACAATGGAAGTGACCAAAGTTGA | 1647 | 48.09 | FLIFHFFFNFFFFLHLFFLSHTLKLPMEMDDQYALSDLRHLMTTPPSRSHFPSSSSIPHHDLFSSSSTSSPAAAFRHHHHHHHTPYDLIMMMPRDPLPDFRSDSTATPPAVVSAPTAPTAFELETASLAADCATPRWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKNYRFFRQLEALYGETTNSAQLPDSHFVGDSNLSFQQNGTNNPTTALPMSYEAQQKHYCDSLSLSNTSEFETSASSDDNDDLGSVGIMDNDSVEKRRKRRGGKCWKAKIKQFIDSQMRKLIDKQEAWLEKLMKTLEQKEKDRMIREEEWRRQEVSRMDRERSFWAKERAWIEARDAALMEALQRLTGRELRDYNSSPDHGLIAPERHRNNSDNQNEDGSEILNNNTGRELVDNNNYQRKTIDEGNKKRKENSRSATTYNLYFQTDSSLYSGGGPCGGGAEIKEQSPNSSNAGGGGGGGSGSHVVQDSCFRFLMGEGDQSQSGLWENFGLKLNNGSDQS | 548 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1218733 | 1221389 | - | Cp4.1LG03g01070.1 | Cpe03g00245 | 465962 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g00245 | 548 | MobiDBLite | consensus disorder prediction | 400 | 464 | - | - | |
| Cpe03g00245 | 548 | MobiDBLite | consensus disorder prediction | 445 | 463 | - | - | |
| Cpe03g00245 | 548 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR PTL | 444 | 535 | - | - | |
| Cpe03g00245 | 548 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR PTL | 55 | 442 | - | - | |
| Cpe03g00245 | 548 | ProSiteProfiles | Myb-like domain profile. | 136 | 194 | IPR001005 | - | |
| Cpe03g00245 | 548 | MobiDBLite | consensus disorder prediction | 46 | 69 | - | - | |
| Cpe03g00245 | 548 | CDD | GT1 | 135 | 201 | - | - | |
| Cpe03g00245 | 548 | Pfam | Myb/SANT-like DNA-binding domain | 135 | 222 | IPR044822 | - | |
| Cpe03g00245 | 548 | PANTHER | - | 55 | 442 | - | - | |
| Cpe03g00245 | 548 | Gene3D | - | 137 | 199 | - | - | |
| Cpe03g00245 | 548 | PANTHER | - | 444 | 535 | - | - | |
| Cpe03g00245 | 548 | MobiDBLite | consensus disorder prediction | 425 | 444 | - | - | |
| Cpe03g00245 | 548 | Coils | Coil | 331 | 358 | - | - | |
| Cpe03g00245 | 548 | MobiDBLite | consensus disorder prediction | 483 | 511 | - | - | |
| Cpe03g00245 | 548 | MobiDBLite | consensus disorder prediction | 400 | 424 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe03g00245 | Cpe08g01037 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g01273 | Cpe-Chr1:7663248 | Cpe03g00245 | Cpe-Chr3:1218733 | 1.51E-76 | dispersed | |
| Cpe03g00048 | Cpe-Chr3:258925 | Cpe03g00245 | Cpe-Chr3:1218733 | 9.33E-13 | dispersed | |
| Cpe03g00245 | Cpe-Chr3:1218733 | Cpe09g00385 | Cpe-Chr9:2330241 | 2.59E-83 | dispersed | |
| Cpe08g01227 | Cpe-Chr8:8927691 | Cpe03g00245 | Cpe-Chr3:1218733 | 2.03E-13 | dispersed | |
| Cpe03g00245 | Cpe-Chr3:1218733 | Cpe08g01037 | Cpe-Chr8:7959995 | 2.83E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49151 | PF13837 | Myb_DNA-bind_4 | 1.50E-19 | CL0123 | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g00245 | - | - | cmos:111441376 | 975.311 |