Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00246 ATGTCTTCCTCCGGCCGCCACCCCATCTACAAAGGCATTCGCCAGCGCACCACCGGCAAATGGGTCTCCGAAATTCGCGAGCCAAGGAAACCCAACCGAATTTGGTTAGGAACCTTCCCAACCGCTGAAATGGCCGCCGTCGCATACGACGTCGCAGCCCTCGCCCTCAAAGGCCAGGACGCCGAGCTCAATTTCCCCAATTCCGCTGCTTCTCTCCCTGTCCCCGCCTCTCGCTCTGCTTCTGATATTCAAGCTGCCGCCGCATCCGCCGCCGCTGCACTTGGCGCAGCGGCAGCCGCCATGGAGGCACGCAATAATAACGGTCGCGGCCGTAGTAACTTCTCTGCAACTAACTCTGCGTACGGAACAAGATACAACGAAAATGAATTGGGAAATCAGTTCGTTGATGAGGATTTAATCTTCGATATGCCTAATCCGCCATGGGAGAACCATTGA 456 56.14 MSSSGRHPIYKGIRQRTTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGQDAELNFPNSAASLPVPASRSASDIQAAAASAAAALGAAAAAMEARNNNGRGRSNFSATNSAYGTRYNENELGNQFVDEDLIFDMPNPPWENH 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1228923 1229663 + Cp4.1LG03g01170.1 Cpe03g00246 465963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00246 151 ProSiteProfiles AP2/ERF domain profile. 9 66 IPR001471 GO:0003700|GO:0006355
Cpe03g00246 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 145 - -
Cpe03g00246 151 CDD AP2 8 68 IPR001471 GO:0003700|GO:0006355
Cpe03g00246 151 SUPERFAMILY DNA-binding domain 9 68 IPR016177 GO:0003677
Cpe03g00246 151 Pfam AP2 domain 8 58 IPR001471 GO:0003700|GO:0006355
Cpe03g00246 151 PRINTS Ethylene responsive element binding protein signature 32 48 IPR001471 GO:0003700|GO:0006355
Cpe03g00246 151 PRINTS Ethylene responsive element binding protein signature 10 21 IPR001471 GO:0003700|GO:0006355
Cpe03g00246 151 SMART rav1_2 9 72 IPR001471 GO:0003700|GO:0006355
Cpe03g00246 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 3 145 - -
Cpe03g00246 151 Gene3D AP2/ERF domain 9 68 IPR036955 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00246 Cpe08g01036 CCT
Cpe03g00246 Cpe08g01036 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00246 Cpe-Chr3:1228923 Cpe05g00306 Cpe-Chr5:1715512 3.78E-36 dispersed
Cpe10g00974 Cpe-Chr10:5509681 Cpe03g00246 Cpe-Chr3:1228923 1.54E-19 dispersed
Cpe03g00246 Cpe-Chr3:1228923 Cpe03g00247 Cpe-Chr3:1233373 1.22E-26 tandem
Cpe03g00246 Cpe-Chr3:1228923 Cpe08g01036 Cpe-Chr8:7953089 6.51E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49152 PF00847 AP2 1.40E-11 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00246 - - csv:101203380 172.94