Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00288 ATGTCTATAAACCACTTCTCTCAAGACTTCCATCAGCCCCTCTTCCCATCTCCCCACCTCCCCATCATGCTTAATAACAACCCCAAATCCTCCCTCTCCGACCACCTCAAGCAGCCCATGTTCGAGAAGCCCTTAACCCCCAGCGACGTTGGGAAACTCAACCGCCTCGTTATCCCCAAGCAGTACGCGGAGAGATACTTTCCCCTCTCACCCTCCTCCTCCTCCTCCTCCGCCGCCGCTGCCACTGCCCACTCTGCTGACAAGGCCTTGCTTCTCACCTTTGAAGATGAGTCTGGAAAGCTGTGGCGCTTCCGTTACTCTTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAGGGCTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCTGGTGATTGCGTCGTTTTTGAACGCCACCGCTCTGATGGCGACAGGTTGTTCATTGGCTGGAAGCGCCGCTCGACGCCCTCTCCGGCGGAGGCTGCTGTGGCGCCAAGTGGCAGTGGCGGTGGGTGTTGGACTAGAATGTTCTACTCTGCAAACCCATATCCTTCTCATCATCATCTTCCTTCACCGCCATACCAATCTCCGGGTTCTACTCTTCCAGAGTCCTCTGTTCAGAGTCAAACAGTATCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGGGTGGACTTAGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGACGGTCGGAGGCGTGTCAAGTATATCGGGTCGGGATCCGACCCGCCACATTTTCTACTCACATTATTCTTCTGCCGTTCCTCATCACATGGATTTCACTTTCCCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 861 53.66 MSINHFSQDFHQPLFPSPHLPIMLNNNPKSSLSDHLKQPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLSPSSSSSSAAAATAHSADKALLLTFEDESGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDCVVFERHRSDGDRLFIGWKRRSTPSPAEAAVAPSGSGGGCWTRMFYSANPYPSHHHLPSPPYQSPGSTLPESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTVGGVSSISGRDPTRHIFYSHYSSAVPHHMDFTFPQDVKQTKYQG 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1474757 1477381 - Cp4.1LG03g00670.1 Cpe03g00288 466005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00288 286 Gene3D - 30 164 IPR015300 -
Cpe03g00288 286 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 32 239 - -
Cpe03g00288 286 SUPERFAMILY DNA-binding pseudobarrel domain 38 156 IPR015300 -
Cpe03g00288 286 MobiDBLite consensus disorder prediction 190 209 - -
Cpe03g00288 286 Pfam B3 DNA binding domain 41 155 IPR003340 GO:0003677
Cpe03g00288 286 SMART B3_2 41 156 IPR003340 GO:0003677
Cpe03g00288 286 ProSiteProfiles B3 DNA-binding domain profile. 41 156 IPR003340 GO:0003677
Cpe03g00288 286 CDD B3_DNA 39 145 IPR003340 GO:0003677
Cpe03g00288 286 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 239 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00288 Cpe-Chr3:1474757 Cpe17g00919 Cpe-Chr17:7125622 3.48E-47 dispersed
Cpe03g00288 Cpe-Chr3:1474757 Cpe08g00992 Cpe-Chr8:7710465 2.05E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49155 PF02362 B3 1.40E-29 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00288 - - csv:101214938 419.083