Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00288 ATGTCTATAAACCACTTCTCTCAAGACTTCCATCAGCCCCTCTTCCCATCTCCCCACCTCCCCATCATGCTTAATAACAACCCCAAATCCTCCCTCTCCGACCACCTCAAGCAGCCCATGTTCGAGAAGCCCTTAACCCCCAGCGACGTTGGGAAACTCAACCGCCTCGTTATCCCCAAGCAGTACGCGGAGAGATACTTTCCCCTCTCACCCTCCTCCTCCTCCTCCTCCGCCGCCGCTGCCACTGCCCACTCTGCTGACAAGGCCTTGCTTCTCACCTTTGAAGATGAGTCTGGAAAGCTGTGGCGCTTCCGTTACTCTTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAGGGCTGGAGCCGCTTTGTCAAAGAGAAGCGCCTTGACGCTGGTGATTGCGTCGTTTTTGAACGCCACCGCTCTGATGGCGACAGGTTGTTCATTGGCTGGAAGCGCCGCTCGACGCCCTCTCCGGCGGAGGCTGCTGTGGCGCCAAGTGGCAGTGGCGGTGGGTGTTGGACTAGAATGTTCTACTCTGCAAACCCATATCCTTCTCATCATCATCTTCCTTCACCGCCATACCAATCTCCGGGTTCTACTCTTCCAGAGTCCTCTGTTCAGAGTCAAACAGTATCGGTTGGGAATTCAAAGATACTGCGGCTGTTCGGGGTGGACTTAGAGTGCCAAACCGACATGTCGGAACCTGAACCACCGTCGACGGTCGGAGGCGTGTCAAGTATATCGGGTCGGGATCCGACCCGCCACATTTTCTACTCACATTATTCTTCTGCCGTTCCTCATCACATGGATTTCACTTTCCCACAAGATGTCAAGCAGACGAAATATCAAGGATAG 861 53.66 MSINHFSQDFHQPLFPSPHLPIMLNNNPKSSLSDHLKQPMFEKPLTPSDVGKLNRLVIPKQYAERYFPLSPSSSSSSAAAATAHSADKALLLTFEDESGKLWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDCVVFERHRSDGDRLFIGWKRRSTPSPAEAAVAPSGSGGGCWTRMFYSANPYPSHHHLPSPPYQSPGSTLPESSVQSQTVSVGNSKILRLFGVDLECQTDMSEPEPPSTVGGVSSISGRDPTRHIFYSHYSSAVPHHMDFTFPQDVKQTKYQG 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1474757 1477381 - Cp4.1LG03g00670.1 Cpe03g00288 466005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00288 286 Gene3D - 30 164 IPR015300 -
Cpe03g00288 286 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 32 239 - -
Cpe03g00288 286 SUPERFAMILY DNA-binding pseudobarrel domain 38 156 IPR015300 -
Cpe03g00288 286 MobiDBLite consensus disorder prediction 190 209 - -
Cpe03g00288 286 Pfam B3 DNA binding domain 41 155 IPR003340 GO:0003677
Cpe03g00288 286 SMART B3_2 41 156 IPR003340 GO:0003677
Cpe03g00288 286 ProSiteProfiles B3 DNA-binding domain profile. 41 156 IPR003340 GO:0003677
Cpe03g00288 286 CDD B3_DNA 39 145 IPR003340 GO:0003677
Cpe03g00288 286 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 32 239 IPR044800 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00288 - - - csv:101214938 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00288 Cpe-Chr3:1474757 Cpe17g00919 Cpe-Chr17:7125622 3.48E-47 dispersed
Cpe03g00288 Cpe-Chr3:1474757 Cpe08g00992 Cpe-Chr8:7710465 2.05E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g941 . . . . Bpe04g01510 . Bma04g01562 Bma10g00112 . Cmo14g00327 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1158 Cone19ag1137 . . . Cme04g02367 . Blo09g00482 Bda03g01650 Bda05g01144 . . . . . . . . Cma14g00333 . Car14g00304 Cpe03g00288 . Bhi11g02352 . . . . . . Cla10g01776 Cam10g1832 Cec10g1886 Cco10g1857 Clacu10g1846 Cmu10g2596 Cre10g1985 Lsi03g01863 Csa03g03451 Chy04g01900 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe08g00992 CCT,ECH 1 147 RAV Transcription Factor Family AT2G36080 64.4 1.8e-48 189.5
Cpe03g00288 . 1 159 RAV Transcription Factor Family AT2G36080 59.6 3.3e-47 185.3
Cpe12g00470 . 73 184 RAV Transcription Factor Family AT2G36080 71.3 5.5e-42 167.9
Cpe17g00919 . 93 211 RAV Transcription Factor Family AT2G36080 66.4 4.7e-41 164.9
Cpe05g00757 . 53 162 RAV Transcription Factor Family AT2G36080 69.9 1.5e-39 159.8
Cpe14g00507 CCT,ECH 28 134 RAV Transcription Factor Family AT2G36080 70.3 9.8e-39 157.1
Cpe09g00275 CST 161 296 RAV Transcription Factor Family AT2G36080 58.1 3.7e-38 155.2
Cpe01g01350 . 172 295 RAV Transcription Factor Family AT2G36080 60.0 1.2e-36 150.2
Cpe05g00757 . 53 169 RAV Transcription Factor Family AT2G46870 87.3 5.4e-56 215.3
Cpe12g00470 . 73 298 RAV Transcription Factor Family AT2G46870 54.1 5.4e-56 215.3
Cpe17g00919 . 98 214 RAV Transcription Factor Family AT2G46870 79.8 1.8e-51 200.3
Cpe14g00507 CCT,ECH 28 144 RAV Transcription Factor Family AT2G46870 77.0 2.2e-49 193.4
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT2G46870 67.2 7.8e-39 158.3
Cpe08g00992 CCT,ECH 36 164 RAV Transcription Factor Family AT2G46870 60.6 7.8e-39 158.3
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT2G46870 65.5 3.9e-38 156.0
Cpe01g01766 CST 165 276 RAV Transcription Factor Family AT2G46870 66.1 1.5e-37 154.1
Cpe03g00288 . 37 155 RAV Transcription Factor Family AT2G46870 63.1 5.6e-37 152.1
Cpe08g00992 CCT,ECH 1 151 RAV Transcription Factor Family AT3G11580 57.5 1.9e-45 179.9
Cpe03g00288 . 1 166 RAV Transcription Factor Family AT3G11580 58.3 3.0e-43 172.6
Cpe17g00919 . 84 221 RAV Transcription Factor Family AT3G11580 57.7 4.8e-41 165.2
Cpe12g00470 . 69 184 RAV Transcription Factor Family AT3G11580 63.8 4.0e-40 162.2
Cpe05g00757 . 53 164 RAV Transcription Factor Family AT3G11580 63.4 4.5e-39 158.7
Cpe14g00507 CCT,ECH 10 134 RAV Transcription Factor Family AT3G11580 58.4 2.9e-38 156.0
Cpe05g00757 . 52 169 RAV Transcription Factor Family AT3G61970 79.3 1.3e-51 200.7
Cpe12g00470 . 74 298 RAV Transcription Factor Family AT3G61970 52.8 9.5e-50 194.5
Cpe17g00919 . 96 207 RAV Transcription Factor Family AT3G61970 82.6 3.6e-49 192.6
Cpe14g00507 CCT,ECH 17 135 RAV Transcription Factor Family AT3G61970 75.6 3.1e-48 189.5
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT3G61970 67.5 4.4e-39 159.1
Cpe01g01766 CST 164 276 RAV Transcription Factor Family AT3G61970 66.1 8.3e-38 154.8
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT3G61970 65.5 1.1e-37 154.5
Cpe05g00757 . 54 169 RAV Transcription Factor Family AT4G01500 67.5 6.2e-42 168.7
Cpe17g00919 . 89 214 RAV Transcription Factor Family AT4G01500 64.2 1.8e-41 167.2
Cpe14g00507 CCT,ECH 15 134 RAV Transcription Factor Family AT4G01500 62.7 9.9e-40 161.4
Cpe03g00288 . 32 233 RAV Transcription Factor Family AT5G06250 52.7 3.8e-50 195.7
Cpe08g00992 CCT,ECH 33 234 RAV Transcription Factor Family AT5G06250 52.2 1.1e-49 194.1
Cpe17g00919 . 99 207 RAV Transcription Factor Family AT5G06250 66.4 6.1e-40 161.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT5G06250 66.4 1.4e-39 160.6
Cpe09g00275 CST 164 292 RAV Transcription Factor Family AT5G06250 60.3 1.8e-39 160.2
Cpe14g00507 CCT,ECH 29 134 RAV Transcription Factor Family AT5G06250 68.4 1.8e-39 160.2
Cpe01g01350 . 169 282 RAV Transcription Factor Family AT5G06250 61.5 4.4e-38 155.6
Cpe04g01246 . 187 465 RAV Transcription Factor Family AT1G50680 54.7 1.9e-83 306.6
Cpe04g00940 CCT,CST,ECH 52 279 RAV Transcription Factor Family AT1G50680 59.9 1.3e-76 283.9
Cpe04g01246 . 179 465 RAV Transcription Factor Family AT1G51120 52.2 1.7e-82 303.5
Cpe04g00940 CCT,CST,ECH 52 284 RAV Transcription Factor Family AT1G51120 59.6 5.1e-79 292.0
Cpe01g01350 . 27 338 RAV Transcription Factor Family AT1G13260 66.7 4.4e-107 385.2
Cpe09g00275 CST 17 337 RAV Transcription Factor Family AT1G13260 62.3 1.3e-98 357.1
Cpe13g00343 . 36 331 RAV Transcription Factor Family AT1G13260 61.3 4.0e-92 335.5
Cpe01g01766 CST 40 325 RAV Transcription Factor Family AT1G13260 62.4 1.8e-89 326.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G13260 64.5 5.6e-38 155.6
Cpe05g00757 . 55 168 RAV Transcription Factor Family AT1G13260 68.7 9.6e-38 154.8
Cpe17g00919 . 100 208 RAV Transcription Factor Family AT1G13260 70.0 1.3e-37 154.5
Cpe12g00470 . 72 184 RAV Transcription Factor Family AT1G13260 67.5 2.8e-37 153.3
Cpe01g01350 . 28 305 RAV Transcription Factor Family AT3G25730 67.0 1.5e-96 350.1
Cpe09g00275 CST 16 304 RAV Transcription Factor Family AT3G25730 64.4 5.0e-92 335.1
Cpe01g01766 CST 37 323 RAV Transcription Factor Family AT3G25730 60.3 4.9e-87 318.5
Cpe13g00343 . 36 297 RAV Transcription Factor Family AT3G25730 63.9 9.2e-86 314.3
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT3G25730 63.1 3.2e-38 156.4
Cpe01g01350 . 22 339 RAV Transcription Factor Family AT1G68840 62.8 2.6e-107 386.0
Cpe09g00275 CST 11 338 RAV Transcription Factor Family AT1G68840 62.1 1.6e-104 376.7
Cpe13g00343 . 1 332 RAV Transcription Factor Family AT1G68840 55.9 1.8e-92 336.7
Cpe01g01766 CST 29 326 RAV Transcription Factor Family AT1G68840 59.0 1.0e-90 330.9
Cpe17g00919 . 84 208 RAV Transcription Factor Family AT1G68840 60.6 4.0e-39 159.5
Cpe12g00470 . 76 184 RAV Transcription Factor Family AT1G68840 69.4 2.6e-38 156.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT1G68840 70.3 5.8e-38 155.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G68840 62.8 9.8e-38 154.8
Cpe14g00507 CCT,ECH 20 134 RAV Transcription Factor Family AT1G68840 64.4 2.4e-36 150.2
Cpe01g01350 . 28 305 RAV Transcription Factor Family AT3G25730 67.0 1.5e-96 350.1
Cpe09g00275 CST 16 304 RAV Transcription Factor Family AT3G25730 64.4 5.0e-92 335.1
Cpe01g01766 CST 37 323 RAV Transcription Factor Family AT3G25730 60.3 4.9e-87 318.5
Cpe13g00343 . 36 297 RAV Transcription Factor Family AT3G25730 63.9 9.2e-86 314.3
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT3G25730 63.1 3.2e-38 156.4
Cpe04g01246 . 179 465 RAV Transcription Factor Family AT1G51120 52.2 1.7e-82 303.5
Cpe04g00940 CCT,CST,ECH 52 284 RAV Transcription Factor Family AT1G51120 59.6 5.1e-79 292.0
Cpe08g00992 CCT,ECH 1 151 RAV Transcription Factor Family AT3G11580 57.5 1.9e-45 179.9
Cpe03g00288 . 1 166 RAV Transcription Factor Family AT3G11580 58.3 3.0e-43 172.6
Cpe17g00919 . 84 221 RAV Transcription Factor Family AT3G11580 57.7 4.8e-41 165.2
Cpe12g00470 . 69 184 RAV Transcription Factor Family AT3G11580 63.8 4.0e-40 162.2
Cpe05g00757 . 53 164 RAV Transcription Factor Family AT3G11580 63.4 4.5e-39 158.7
Cpe14g00507 CCT,ECH 10 134 RAV Transcription Factor Family AT3G11580 58.4 2.9e-38 156.0
Cpe05g00757 . 54 169 RAV Transcription Factor Family AT4G01500 67.5 6.2e-42 168.7
Cpe17g00919 . 89 214 RAV Transcription Factor Family AT4G01500 64.2 1.8e-41 167.2
Cpe14g00507 CCT,ECH 15 134 RAV Transcription Factor Family AT4G01500 62.7 9.9e-40 161.4
Cpe08g00992 CCT,ECH 1 147 RAV Transcription Factor Family AT2G36080 64.4 1.8e-48 189.5
Cpe03g00288 . 1 159 RAV Transcription Factor Family AT2G36080 59.6 3.3e-47 185.3
Cpe12g00470 . 73 184 RAV Transcription Factor Family AT2G36080 71.3 5.5e-42 167.9
Cpe17g00919 . 93 211 RAV Transcription Factor Family AT2G36080 66.4 4.7e-41 164.9
Cpe05g00757 . 53 162 RAV Transcription Factor Family AT2G36080 69.9 1.5e-39 159.8
Cpe14g00507 CCT,ECH 28 134 RAV Transcription Factor Family AT2G36080 70.3 9.8e-39 157.1
Cpe09g00275 CST 161 296 RAV Transcription Factor Family AT2G36080 58.1 3.7e-38 155.2
Cpe01g01350 . 172 295 RAV Transcription Factor Family AT2G36080 60.0 1.2e-36 150.2
Cpe03g00288 . 32 233 RAV Transcription Factor Family AT5G06250 52.7 3.8e-50 195.7
Cpe08g00992 CCT,ECH 33 234 RAV Transcription Factor Family AT5G06250 52.2 1.1e-49 194.1
Cpe17g00919 . 99 207 RAV Transcription Factor Family AT5G06250 66.4 6.1e-40 161.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT5G06250 66.4 1.4e-39 160.6
Cpe09g00275 CST 164 292 RAV Transcription Factor Family AT5G06250 60.3 1.8e-39 160.2
Cpe14g00507 CCT,ECH 29 134 RAV Transcription Factor Family AT5G06250 68.4 1.8e-39 160.2
Cpe01g01350 . 169 282 RAV Transcription Factor Family AT5G06250 61.5 4.4e-38 155.6
Cpe05g00757 . 53 169 RAV Transcription Factor Family AT2G46870 87.3 5.4e-56 215.3
Cpe12g00470 . 73 298 RAV Transcription Factor Family AT2G46870 54.1 5.4e-56 215.3
Cpe17g00919 . 98 214 RAV Transcription Factor Family AT2G46870 79.8 1.8e-51 200.3
Cpe14g00507 CCT,ECH 28 144 RAV Transcription Factor Family AT2G46870 77.0 2.2e-49 193.4
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT2G46870 67.2 7.8e-39 158.3
Cpe08g00992 CCT,ECH 36 164 RAV Transcription Factor Family AT2G46870 60.6 7.8e-39 158.3
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT2G46870 65.5 3.9e-38 156.0
Cpe01g01766 CST 165 276 RAV Transcription Factor Family AT2G46870 66.1 1.5e-37 154.1
Cpe03g00288 . 37 155 RAV Transcription Factor Family AT2G46870 63.1 5.6e-37 152.1
Cpe04g01246 . 187 465 RAV Transcription Factor Family AT1G50680 54.7 1.9e-83 306.6
Cpe04g00940 CCT,CST,ECH 52 279 RAV Transcription Factor Family AT1G50680 59.9 1.3e-76 283.9
Cpe05g00757 . 52 169 RAV Transcription Factor Family AT3G61970 79.3 1.3e-51 200.7
Cpe12g00470 . 74 298 RAV Transcription Factor Family AT3G61970 52.8 9.5e-50 194.5
Cpe17g00919 . 96 207 RAV Transcription Factor Family AT3G61970 82.6 3.6e-49 192.6
Cpe14g00507 CCT,ECH 17 135 RAV Transcription Factor Family AT3G61970 75.6 3.1e-48 189.5
Cpe01g01350 . 174 286 RAV Transcription Factor Family AT3G61970 67.5 4.4e-39 159.1
Cpe01g01766 CST 164 276 RAV Transcription Factor Family AT3G61970 66.1 8.3e-38 154.8
Cpe09g00275 CST 167 279 RAV Transcription Factor Family AT3G61970 65.5 1.1e-37 154.5
Cpe01g01350 . 27 338 RAV Transcription Factor Family AT1G13260 66.7 4.4e-107 385.2
Cpe09g00275 CST 17 337 RAV Transcription Factor Family AT1G13260 62.3 1.3e-98 357.1
Cpe13g00343 . 36 331 RAV Transcription Factor Family AT1G13260 61.3 4.0e-92 335.5
Cpe01g01766 CST 40 325 RAV Transcription Factor Family AT1G13260 62.4 1.8e-89 326.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G13260 64.5 5.6e-38 155.6
Cpe05g00757 . 55 168 RAV Transcription Factor Family AT1G13260 68.7 9.6e-38 154.8
Cpe17g00919 . 100 208 RAV Transcription Factor Family AT1G13260 70.0 1.3e-37 154.5
Cpe12g00470 . 72 184 RAV Transcription Factor Family AT1G13260 67.5 2.8e-37 153.3
Cpe01g01350 . 22 339 RAV Transcription Factor Family AT1G68840 62.8 2.6e-107 386.0
Cpe09g00275 CST 11 338 RAV Transcription Factor Family AT1G68840 62.1 1.6e-104 376.7
Cpe13g00343 . 1 332 RAV Transcription Factor Family AT1G68840 55.9 1.8e-92 336.7
Cpe01g01766 CST 29 326 RAV Transcription Factor Family AT1G68840 59.0 1.0e-90 330.9
Cpe17g00919 . 84 208 RAV Transcription Factor Family AT1G68840 60.6 4.0e-39 159.5
Cpe12g00470 . 76 184 RAV Transcription Factor Family AT1G68840 69.4 2.6e-38 156.8
Cpe05g00757 . 54 162 RAV Transcription Factor Family AT1G68840 70.3 5.8e-38 155.6
Cpe08g00992 CCT,ECH 36 156 RAV Transcription Factor Family AT1G68840 62.8 9.8e-38 154.8
Cpe14g00507 CCT,ECH 20 134 RAV Transcription Factor Family AT1G68840 64.4 2.4e-36 150.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006170 2 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49155 PF02362 B3 1.40E-29 CL0405 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00288 Cpe_Chr03 FPKM 84.358917 91.729591 54.841663 54.7938 40.587402 45.414722 41.945011 48.466286 44.228512 45.393444