Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00311 ATGGCGACCTACCTTCATGCCAATTCTGATCACTTCCAGTCTCCTGATGCCGCCCTTCAAACCCTCGTTTTAAGGAACCCAACCTATGTCCAATTCTCCGACACTCCGCCGCCGCCTCCCTCGCACCCTAATCTCCTTTTCTTCAATTCCCCTGCTCCTGCCCCTGCCCCTGCTGCTCCTAATTCCTTCTCTACACAGCAATTCGTTGGAATCCCCACGTCCCAAGATAACAATTCCCATTCCTTGAACCCCCACCATGATATCTCCGCCTTGCACGGCTTTCTCCCCCGTGTTCAACCCAATATTTGGAATTCAATTGACACTTCCACGGCGGCGCGTGATTCTTCACGCGCTCAGCAGGGCTTGTCGTTGAGTCTCTCTTCGCAATACCCTCCTGGTTTTGGGTCGAGAGATGTTGTTCAATCGCATACCCAGCAGGCGGTTTCTGGTGAGGAGACTCTGCGGATCTCTGGTGGATCGTCTTCTTCGGCTTCTGGTGTTACCAATGGCGTTGCTGGAATTCAGGGTGTTTTAATTAGCTCTAAGTATCTCAAGGCTGCGCAAGAACTTTTAGATGAGGTTGTCAATGTTAGCCAAAATAGAATTAAGAACGAATCGTCTCCAAGAAAGGGAAACGGAAATCAAACTAAGATGAACGGAGATGCATCCGCTGCTACTGGAACTGCTGATGGTTCCTTAGAAGGTGAAGCCGATGGTAAACGCGCCGTCGAGCTCACCACCGCCGAGAGACAAGAAATTCAGATGAAGAAAGTAAAGCTTATTAGCATGCTTGATGAGGTGGAGCAGAGGTACAGACAGTACCACCACCAGATGCAGATAGTGATATCCACTTTCGAGCAGGCGGCCAGCGCCGGGTCGGCGAGAACCTACACAGCCCTTGCACTTCAAACGATCTCCAAGCAATTCCGCTGCTTAAAAGACGCCATCGCCGGCCAAATTCGAGCAGCCAGCAAGAGCTTGGGTGAAGAAGAATGCGTCGGAAAAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATCACCATCTCCGGCAACAACGGGCTCTGCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAGAGAGGCTTACCGGAGCGCTCTGTTTCGATTCTTCGCGCTTGGCTTTTCGAACACTTCCTCCACCCTTACCCTAAGGATTCGGATAAACACATGCTCGCCAAGCAAACAGGGCTCACCCGAAGCCAGGTTTCGAATTGGTTCATAAACGCGAGAGTTCGGCTATGGAAGCCAATGGTGGAAGAGATGTACATGGAAGAAATCAAGGAGCAAGAACAGAACGGAGGTGGATCGACACCGGCGACGGTGGGGGAAAGAAACAACGAAGATTCAGTTTCAAAGTCCATGGAGACAAAAAGCCCCAATTCAAAACAAGAGAATTCCCCGAACCAAAACGTTCATCCTTCAGTTTCAATCTCCAATTCCTCCGGGGGAAATGTCCGAAACCCATCTGGGTTTACACTAATCGGAACCTCATCGGAGCTGGATGGAATCACTCAAAGAAGCCCCAAGAAACAGAGACGCCCCGAAATCCTCTATTCCTCAGACAACAGCGTGGCATTCATAAACATGGACATCAAACCCCCAGAAGAAGGAGAAGGACAGAATCAACAGAATCAGAACCAAAATCACGATGTACCAATGAAATTCGACGAGGAGAGACAAAACAGAGATGGGTATTCGTTTCTAGGCCAACCCCATTTCAACCTCGGCGGATTCGGGCAATACCCAATAGGGGAAATGGCGAGATTCGAGGCGGATGAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTGTCTTTAACTCTAGGGCTTCCCCATTGCGAAAATCTGTCCCTAAACGCAGCAACCCACCAAAGGTTCCTCCCAAATCAGAGCATCCAATTAGGAAGAAGAACAGAAATTGGCAAAGCCGCCGATTATTCCGCCATGAACGCCTCCACAACAGCTCACTCCTCCGCCGCCTTTGATACCATGAACATCCAAAATGGAAAACGGTTCGCCGCCCAGTTACTGCCAGACTTCGTGGCCTAA 2079 50.02 MATYLHANSDHFQSPDAALQTLVLRNPTYVQFSDTPPPPPSHPNLLFFNSPAPAPAPAAPNSFSTQQFVGIPTSQDNNSHSLNPHHDISALHGFLPRVQPNIWNSIDTSTAARDSSRAQQGLSLSLSSQYPPGFGSRDVVQSHTQQAVSGEETLRISGGSSSSASGVTNGVAGIQGVLISSKYLKAAQELLDEVVNVSQNRIKNESSPRKGNGNQTKMNGDASAATGTADGSLEGEADGKRAVELTTAERQEIQMKKVKLISMLDEVEQRYRQYHHQMQIVISTFEQAASAGSARTYTALALQTISKQFRCLKDAIAGQIRAASKSLGEEECVGKKMEGSRLKFVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKEQEQNGGGSTPATVGERNNEDSVSKSMETKSPNSKQENSPNQNVHPSVSISNSSGGNVRNPSGFTLIGTSSELDGITQRSPKKQRRPEILYSSDNSVAFINMDIKPPEEGEGQNQQNQNQNHDVPMKFDEERQNRDGYSFLGQPHFNLGGFGQYPIGEMARFEADEFTPRFSGNNGVSLTLGLPHCENLSLNAATHQRFLPNQSIQLGRRTEIGKAADYSAMNASTTAHSSAAFDTMNIQNGKRFAAQLLPDFVA 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1597464 1601228 + Cp4.1LG03g00420.1 Cpe03g00311 466028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00311 692 Coils Coil 250 270 - -
Cpe03g00311 692 MobiDBLite consensus disorder prediction 440 514 - -
Cpe03g00311 692 MobiDBLite consensus disorder prediction 201 239 - -
Cpe03g00311 692 Pfam Homeobox KN domain 383 422 IPR008422 GO:0003677|GO:0006355
Cpe03g00311 692 SMART HOX_1 366 430 IPR001356 GO:0003677
Cpe03g00311 692 SUPERFAMILY Homeodomain-like 367 433 IPR009057 -
Cpe03g00311 692 ProSiteProfiles 'Homeobox' domain profile. 363 426 IPR001356 GO:0003677
Cpe03g00311 692 CDD homeodomain 366 427 IPR001356 GO:0003677
Cpe03g00311 692 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 17 640 - -
Cpe03g00311 692 MobiDBLite consensus disorder prediction 201 226 - -
Cpe03g00311 692 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 17 640 - -
Cpe03g00311 692 MobiDBLite consensus disorder prediction 437 535 - -
Cpe03g00311 692 Pfam Associated with HOX 177 317 IPR006563 -
Cpe03g00311 692 SMART prehox3 172 318 IPR006563 -
Cpe03g00311 692 Gene3D - 369 445 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00311 Cpe08g00966 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00311 Cpe-Chr3:1597464 Cpe16g00265 Cpe-Chr16:4649470 7.90E-103 dispersed
Cpe07g00555 Cpe-Chr7:3675794 Cpe03g00311 Cpe-Chr3:1597464 2.50E-44 dispersed
Cpe13g00140 Cpe-Chr13:1007021 Cpe03g00311 Cpe-Chr3:1597464 8.66E-76 dispersed
Cpe20g00740 Cpe-Chr20:6328594 Cpe03g00311 Cpe-Chr3:1597464 1.41E-58 dispersed
Cpe16g00823 Cpe-Chr16:7935654 Cpe03g00311 Cpe-Chr3:1597464 2.60E-135 wgd
Cpe03g00311 Cpe-Chr3:1597464 Cpe05g00449 Cpe-Chr5:2586530 3.04E-166 wgd
Cpe03g00311 Cpe-Chr3:1597464 Cpe08g00966 Cpe-Chr8:7581769 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49157 PF07526 POX 1.50E-47 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00311 - - csv:101208201 1058.9