Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe03g00316 | ATGAACGATTTGTTCTCTTCTCGCTCTTTCTCCCGCGACAGCCATGTCGTTGAGATGGGCAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCCGTTAAAGATGAGCTCAAGGAGCTTGATCGACTCTGCAGCAAACTCCATGACTCCCATGAACAGAGCAAGACGCTTCACAATGCTAAGGCTGTCAAAGACCTCCGATCTCGTATGGATTCCGATGTTTCTCTTGCTCTCAAGAAGGCCAAACTCATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGCTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAACAGATCTCCTCCGAGTACAGGGAGACCGTTCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGACATATTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAAGAACCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTCGACGACATCGAGAGCCATGTGAACCGTGCTCATTCTTTTGTCCGAGGTGGTACACAGGAGTTGACTACAGCCAGAGTGTACCAGAAAAACACCCGAAAATGGACAATTATTGGCATCATCATTTTGCTCATCATTGTCTTGATTATTGTCCTCAGCCTCCGCCCTTGGAAGAACAACAACAGTAGCTCATCCACAACACCCTAA | 921 | 48.32 | MNDLFSSRSFSRDSHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELDRLCSKLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLEKNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELTTARVYQKNTRKWTIIGIIILLIIVLIIVLSLRPWKNNNSSSSTTP | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1660184 | 1662395 | + | Cp4.1LG03g00400.1 | Cpe03g00316 | 466033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe03g00316 | 306 | PANTHER | SYNTAXIN | 9 | 295 | IPR045242 | - | |
| Cpe03g00316 | 306 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
| Cpe03g00316 | 306 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
| Cpe03g00316 | 306 | Coils | Coil | 31 | 58 | - | - | |
| Cpe03g00316 | 306 | Gene3D | - | 29 | 161 | - | - | |
| Cpe03g00316 | 306 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 | |
| Cpe03g00316 | 306 | Coils | Coil | 204 | 224 | - | - | |
| Cpe03g00316 | 306 | Coils | Coil | 126 | 150 | - | - | |
| Cpe03g00316 | 306 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cpe03g00316 | 306 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 295 | - | - | |
| Cpe03g00316 | 306 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
| Cpe03g00316 | 306 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020|GO:0016192 | |
| Cpe03g00316 | 306 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
| Cpe03g00316 | 306 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020 | |
| Cpe03g00316 | 306 | Gene3D | - | 197 | 292 | - | - | |
| Cpe03g00316 | 306 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe03g00316 | Cpe-Chr3:1660184 | Cpe20g00409 | Cpe-Chr20:2339171 | 2.40E-122 | dispersed | |
| Cpe19g00503 | Cpe-Chr19:4303812 | Cpe03g00316 | Cpe-Chr3:1660184 | 5.38E-139 | wgd | |
| Cpe03g00316 | Cpe-Chr3:1660184 | Cpe08g00962 | Cpe-Chr8:7547582 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe03g00316 | K08486 | - | csv:101208931 | 537.339 |