Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00316 ATGAACGATTTGTTCTCTTCTCGCTCTTTCTCCCGCGACAGCCATGTCGTTGAGATGGGCAACGCCTCCTCTTCCCCCACTGCTGTTAATCTCGACAAGTTCTTTGAAGATGTTGAATCCGTTAAAGATGAGCTCAAGGAGCTTGATCGACTCTGCAGCAAACTCCATGACTCCCATGAACAGAGCAAGACGCTTCACAATGCTAAGGCTGTCAAAGACCTCCGATCTCGTATGGATTCCGATGTTTCTCTTGCTCTCAAGAAGGCCAAACTCATTAAGGTCCGATTGGAGGCTCTTGATCGCTCCAATGCCGCCAATCGGAGCCTCCCCGGTTGCGGCCCTGGTTCCTCTTCTGATCGGACTCGGACTTCTGTAGTCAACGGCTTGAGGAAGAAATTGCAGGATTCCATGGAGAGCTTCAACAATCTCAGGCAACAGATCTCCTCCGAGTACAGGGAGACCGTTCAGCGAAGATATTTCACTGTTACTGGTGAAAATCCGGACGAGAAGACCATTGACATATTGATATCTACAGGTGAAAGTGAGACATTTTTGCAGAAAGCCATTCAAGAACAAGGCAGAGGCAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCTGTAAAAGACCTGGAAAAGAACCTCAAGGAGCTGCACCAGGTTTTCATGGACATGGCAGTCTTGGTGCACGAGCAAGGCGAGAAACTCGACGACATCGAGAGCCATGTGAACCGTGCTCATTCTTTTGTCCGAGGTGGTACACAGGAGTTGACTACAGCCAGAGTGTACCAGAAAAACACCCGAAAATGGACAATTATTGGCATCATCATTTTGCTCATCATTGTCTTGATTATTGTCCTCAGCCTCCGCCCTTGGAAGAACAACAACAGTAGCTCATCCACAACACCCTAA 921 48.32 MNDLFSSRSFSRDSHVVEMGNASSSPTAVNLDKFFEDVESVKDELKELDRLCSKLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLQDSMESFNNLRQQISSEYRETVQRRYFTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLEKNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELTTARVYQKNTRKWTIIGIIILLIIVLIIVLSLRPWKNNNSSSSTTP 306
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 1660184 1662395 + Cp4.1LG03g00400.1 Cpe03g00316 466033
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00316 306 PANTHER SYNTAXIN 9 295 IPR045242 -
Cpe03g00316 306 SMART tSNARE_6 196 263 IPR000727 -
Cpe03g00316 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Cpe03g00316 306 Coils Coil 31 58 - -
Cpe03g00316 306 Gene3D - 29 161 - -
Cpe03g00316 306 SMART SynN_4 26 152 IPR006011 GO:0016020
Cpe03g00316 306 Coils Coil 204 224 - -
Cpe03g00316 306 Coils Coil 126 150 - -
Cpe03g00316 306 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cpe03g00316 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 295 - -
Cpe03g00316 306 CDD SNARE_syntaxin1-like 200 262 - -
Cpe03g00316 306 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Cpe03g00316 306 Pfam SNARE domain 237 289 IPR000727 -
Cpe03g00316 306 CDD SynN 31 188 IPR006011 GO:0016020
Cpe03g00316 306 Gene3D - 197 292 - -
Cpe03g00316 306 Pfam Syntaxin 33 236 IPR006011 GO:0016020
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00316 Cpe-Chr3:1660184 Cpe20g00409 Cpe-Chr20:2339171 2.40E-122 dispersed
Cpe19g00503 Cpe-Chr19:4303812 Cpe03g00316 Cpe-Chr3:1660184 5.38E-139 wgd
Cpe03g00316 Cpe-Chr3:1660184 Cpe08g00962 Cpe-Chr8:7547582 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00316 K08486 - csv:101208931 537.339