Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00321 ATGAACAACTCCACAGGCTCCGGCGGATCAGATGCCTCCGGCAACGTCGGCACTTTCCCCTACATAGTCGGAATTTCAGTCGGAGTTCTTTTCCTTCTCACAACCGTAACAATCGCTACCTATTTATGCACCAGAACCACCGTTCCGCAGCCGAATCGCCGTCGTCGGCCAGGGGAACGGCGCGATGTCATCGTCGATTTTGGACCGGGGCTCGAAGATGAGGCCATTAATGAATATCCGAAGATTCTGTACTCGGAAAAGAAATTGGAGGGAAAAATGGAGTCCGCCGCTGCGAGTGGTTGTTCGATTTGTTTGGGGGACTATAAAAACGAGGATGTTCTACGGTTGTTGCCGGATTGTGGTCATATGTTTCACAGCGGCTGTATCGATCCGTGGTTAAGGCTGAACCCTAGCTGCCCTGTTTGCAGAACTTCGCCGGTCCCGACGCCGCTTTCCACCCCTCTGGCGGAGGTGGTTCCGTTGGCCAACGGAAGGAGTTGA 501 53.69 MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGERRDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDCGHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1681697 1682197 + Cp4.1LG03g00390.1 Cpe03g00321 466038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00321 166 Pfam Ring finger domain 101 143 IPR001841 -
Cpe03g00321 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Cpe03g00321 166 SUPERFAMILY RING/U-box 75 148 - -
Cpe03g00321 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Cpe03g00321 166 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 9 164 - -
Cpe03g00321 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 164 IPR045899 -
Cpe03g00321 166 SMART ring_2 101 142 IPR001841 -
Cpe03g00321 166 CDD RING-H2_PA-TM-RING 101 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00321 Cpe-Chr3:1681697 Cpe11g00408 Cpe-Chr11:2259859 2.27E-32 dispersed
Cpe10g00317 Cpe-Chr10:1843894 Cpe03g00321 Cpe-Chr3:1681697 7.71E-59 wgd
Cpe19g00504 Cpe-Chr19:4306471 Cpe03g00321 Cpe-Chr3:1681697 2.11E-55 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00321 - - mdm:103454174 196.438