Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00363 ATGGAGTTGGCTTTGAGCCTCGGCGATGCGCCCATTTCCAATAAGCCATTTGGGTTTCTCTCCAATGGAGTTTCTAAGCTCTCCTCCTCTTCTTCTTCCTCTCTAATGGCTTTAGGGTTTTGTGTTGGTTTGGCTCATGATTCCGCTTCCGGTTCACCTTCTGGTTCGGTTCATGACGACGACGATGAAGAAGAAGATGATAATCATGATCGGAAAATGGTTCTTTCCGGTTCGGATCCGCCGGTTCAGCTGGAACTTCTTCCTTCAGCTCCTGTTCCTCGTTCTTCTCATCTCCGATTTCCATGGCTTTCCGATCACTTAATCCCAGAAGGAGAGGAAAGGGTAGCGCTGGATGTAAACCGCCGCCCTGCGGTGGCGGCTGCGGAGGAGACAGAAGACAGGGCGGCGGTTACGGCGGCGTTGTCATCTCCGAACAGTACGGTTTCGTCTTTTCAGATGGATTTTGGGGTCAGAGCTTCCTCAAGAATCAGCGACGATGAAGAAAATGGGTCTGCAAGAAAAAAGCTTCGACTTTCTAAAGATCAATCGGCTTTTCTTGAAGAAAGCTTCAAAGAACATAGCACTCTCAATCCAAAGCAGAAGCTAGCACTAGCCAAGCAGCTCAACCTCCGACCAAGACAAGTGGAAGTTTGGACAAAGTTGAAGCAGACAGAAGTAGATTGTGAGTATTTAAGGAGATGTTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAGCTTCAAGAATTAAGAGCTTTAAAAACATCTCAGCCCTTTTACATGCAGCTTCCGGCCACCACTCTCACCATGTGTCCGTCTTGCGAGCGCGTCGCCACCGCCACTCCCGCTGCCTCCGTTGCCACCAAAACCACCGTCACCGTCGCCACCACCGCCCCCAACCCGGCCGCTCTATGCCTTGCAAACAAGGCGAGGATCTTGCCATTTCCTCATTTGCATCAAGCTGCCTCATAA 978 49.9 MELALSLGDAPISNKPFGFLSNGVSKLSSSSSSSLMALGFCVGLAHDSASGSPSGSVHDDDDEEEDDNHDRKMVLSGSDPPVQLELLPSAPVPRSSHLRFPWLSDHLIPEGEERVALDVNRRPAVAAAEETEDRAAVTAALSSPNSTVSSFQMDFGVRASSRISDDEENGSARKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWTKLKQTEVDCEYLRRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATATPAASVATKTTVTVATTAPNPAALCLANKARILPFPHLHQAAS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1939294 1941270 - Cp4.1LG03g03980.1 Cpe03g00363 466080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00363 325 Pfam Homeodomain 173 218 IPR001356 GO:0003677
Cpe03g00363 325 PANTHER - 50 299 - -
Cpe03g00363 325 MobiDBLite consensus disorder prediction 49 90 - -
Cpe03g00363 325 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
Cpe03g00363 325 Gene3D - 179 220 - -
Cpe03g00363 325 CDD homeodomain 173 218 IPR001356 GO:0003677
Cpe03g00363 325 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Cpe03g00363 325 Coils Coil 228 258 - -
Cpe03g00363 325 SMART HOX_1 171 228 IPR001356 GO:0003677
Cpe03g00363 325 ProSiteProfiles 'Homeobox' domain profile. 169 229 IPR001356 GO:0003677
Cpe03g00363 325 Pfam HD-ZIP protein N terminus 116 151 IPR006712 GO:0005634
Cpe03g00363 325 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 50 299 - -
Cpe03g00363 325 SUPERFAMILY Homeodomain-like 152 218 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00363 Cpe-Chr3:1939294 Cpe12g00802 Cpe-Chr12:7237738 4.11E-99 dispersed
Cpe18g00656 Cpe-Chr18:6660658 Cpe03g00363 Cpe-Chr3:1939294 7.25E-25 dispersed
Cpe03g00363 Cpe-Chr3:1939294 Cpe08g01324 Cpe-Chr8:9505508 6.18E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49162 PF00046 Homeodomain 8.00E-09 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00363 K09338 - csv:101222778 346.665