Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00364 ATGGGTGATGAAATCTTTGATGCAATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCTTTCGAACTCGGTTCTTCAAATTGAAGATGTGAATTTAGCTGATTTGACTGAGGATCCTGTTCATAGATTTGGGGAAGCTATCAGGTTTAGGACGAGACAGCGGTGGCGAAGGCGTCAAGTCCAAATTCCTTCTGAGACTCAGAATATTACAATGGAATTGAGTGAAATCATGGTCAATTCAGGCAATGGGAATACATTGCAGCCATTACAGGCTGGTGAGGGCAGTATCACTGCTGAGGAAAGGAAGAACGAAGCGGGGAAAACATGTGAAATCAACAATGAAGCTCTGGAAGATGAAAAGACAGAGAATAAGAGTGATGTTGAAAAGGGCAGCGATTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTGGATTTGGCTAGGGACCCCGTTGTAACTTGTTGCGGTCATCTATACTGTTGGCCGTGCCTTTATCGATGGTTACATCTACATTCAGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTCACTACAAAAAACGTAACTCCAATCTATGGGCGTGGTGGTAATACCCCAGTGACAGAGGAGGATGCTACACTTAAGATTCCTCTAAGGCCCCACGCTCGGAAAGTTGAAAGTTTGAGGCAAACCATCCAGAGGACTGCATTGAGTTTCCCAGTGGAGGATATGATTCGTCGATTGGGAAACAGATTTGATTTTAATCGTGACCTTGACCAACCGCTCGAACCAGACAGCTCACACGAAACCTTTGGTAGATCTCCAACCTTGTTGAATAGGCTTTTAACATCCAGGGGAATTCGTAGAGAACAAATGTCACTGCCCCCCCATGATGAAGTAGGAGATTTAGCACACGCCGATGTGTCTGGCATTGAGACTGGGGAAACCCGTCTTCAGTCTCTCCCCGTGCTTCGATCATTACTACACCGGACAAGAGTTTCTTCTCTTACTTCTGCATTTAACTCCGCTGATAGGCTTCCAGATGGTCTTCTATATACCGATCCGCTCATTCCTAGAATTCAAGAGCAGCCTCCTCCACCTGTTGAGGATAGAGATTCATTCTCTAGCATTGCTGCTGTTATCAATTCAGAGAGTCAAATGGACACTGCTGTAGAAATTGATTCCATGGTCTCCATTTCAACTTCATCCTCCAGAAGGAGAACTGATGCCTTACAGGTTTCTGATGTCGACAGTGGAAACTCTCGGGCACCCAGGCGGAGAAGATTGGCTTGA 1281 45.43 MGDEIFDAMNLDLNLGPIPEPLSNSVLQIEDVNLADLTEDPVHRFGEAIRFRTRQRWRRRQVQIPSETQNITMELSEIMVNSGNGNTLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKTENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTTKNVTPIYGRGGNTPVTEEDATLKIPLRPHARKVESLRQTIQRTALSFPVEDMIRRLGNRFDFNRDLDQPLEPDSSHETFGRSPTLLNRLLTSRGIRREQMSLPPHDEVGDLAHADVSGIETGETRLQSLPVLRSLLHRTRVSSLTSAFNSADRLPDGLLYTDPLIPRIQEQPPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSISTSSSRRRTDALQVSDVDSGNSRAPRRRRLA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1952877 1954157 - Cp4.1LG03g04020.1 Cpe03g00364 466081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00364 426 CDD RING-HC_AtRMA_like 140 184 - -
Cpe03g00364 426 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Cpe03g00364 426 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Cpe03g00364 426 PANTHER OS01G0830200 PROTEIN 17 417 - -
Cpe03g00364 426 MobiDBLite consensus disorder prediction 395 415 - -
Cpe03g00364 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 197 IPR013083 -
Cpe03g00364 426 SMART ring_2 142 182 IPR001841 -
Cpe03g00364 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 417 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cpe03g00364 426 MobiDBLite consensus disorder prediction 395 426 - -
Cpe03g00364 426 SUPERFAMILY RING/U-box 138 195 - -
Cpe03g00364 426 Pfam Zinc finger, C3HC4 type (RING finger) 142 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00364 Cpe-Chr3:1952877 Cpe07g00444 Cpe-Chr7:2853315 1.19E-27 dispersed
Cpe03g00894 Cpe-Chr3:5696077 Cpe03g00364 Cpe-Chr3:1952877 2.23E-36 transposed
Cpe04g00449 Cpe-Chr4:5240411 Cpe03g00364 Cpe-Chr3:1952877 5.78E-07 transposed
Cpe03g00364 Cpe-Chr3:1952877 Cpe08g01325 Cpe-Chr8:9514611 4.05E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00364 K10666 - csv:101220497 768.074