Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00368 ATGGCAGATTCCGAGGATATTCAGCCGCTCGTTTGCGATAATGGAACAGGGATGGTCAAGGCTGGATTTGCTGGAGACGATGCTCCAAGGGCTGTATTTCCTAGCATCGTTGGACGCCCCAGACACACTGGCGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATTGAGCATGGTATCGTTAGCAATTGGGATGATATGGAAAAAATTTGGCATCACACTTTCTACAATGAGCTTCGAGTTGCCCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCCCTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACGCCCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACTGGGATTGTTATGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGTTATGCTCTCCCACATGCAATCCTCCGTCTAGACCTGGCTGGCCGCGATCTCACAGATGCTCTAATGAAAATCCTGACTGAACGTGGTTACTCTTTCACCACCAGCGCGGAGCGTGAAATTGTGAGAGATATGAAAGAGAAACTAGCTTACATAGCCCTGGACTATGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCTGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGAGCTGAAAGATTCCGATGCCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAACTCTATCATGAAATGTGATGTCGATATTAGAAAGGATCTCTATGGCAATATTGTCCTCAGTGGTGGTTCCACCATGTTCACTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTGGCTCCTAGTAGCATGAAGATCAAAGTGGTAGCTCCACCTGAAAGAAAGTACAGTGTCTGGATTGGCGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCGGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.91 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1975582 1979913 + Cp4.1LG03g04040.1 Cpe03g00368 466085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00368 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cpe03g00368 377 PANTHER ACTIN 1 376 IPR004000 -
Cpe03g00368 377 PANTHER ACTIN-97 1 376 - -
Cpe03g00368 377 PRINTS Actin signature 28 37 IPR004000 -
Cpe03g00368 377 PRINTS Actin signature 51 62 IPR004000 -
Cpe03g00368 377 PRINTS Actin signature 63 85 IPR004000 -
Cpe03g00368 377 PRINTS Actin signature 117 130 IPR004000 -
Cpe03g00368 377 PRINTS Actin signature 142 161 IPR004000 -
Cpe03g00368 377 PRINTS Actin signature 238 254 IPR004000 -
Cpe03g00368 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cpe03g00368 377 Gene3D - 140 340 - -
Cpe03g00368 377 Gene3D - 10 371 - -
Cpe03g00368 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cpe03g00368 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cpe03g00368 377 Pfam Actin 5 377 IPR004000 -
Cpe03g00368 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cpe03g00368 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cpe03g00368 377 SMART actin_3 7 377 IPR004000 -
Cpe03g00368 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00368 Cpe-Chr3:1975582 Cpe11g00097 Cpe-Chr11:521247 0 dispersed
Cpe16g00072 Cpe-Chr16:1494604 Cpe03g00368 Cpe-Chr3:1975582 0 dispersed
Cpe19g00544 Cpe-Chr19:4606352 Cpe03g00368 Cpe-Chr3:1975582 0 dispersed
Cpe03g00368 Cpe-Chr3:1975582 Cpe01g00187 Cpe-Chr1:1058392 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00368 K10355 - aof:109833817 744.191