Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00385 ATGGAGATTGTTCATCATCATCAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGAAGAAGAGCTTGGAACCAGGAAGAAGAACAAACTCCTTCATTATTCAGCTTCCAAAACAACAATTTTGCTGATCAATTACCCTTCTCCATGAATCTCCCATCCATTTCATCAAATTTCATAACCAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCAAGCCCTTTTTCTGTATCTGGATGGACAAGAACCCTCTTCAACCACTACTACTCATCACCAATCACAGAACTCGAGCATGAGACCGCCGATGTTGAACATCTTCCCGTCGCAGCCGATGCATGTCGACCCGTTGCCGATAAAAGGAAGCACAGCAATGATTAACCATGGTGATTCAAAGATCAAACCATCAGAGCCGTCCAAAGAGTTGGCCAACCAAAGCAGCAATGGAGCCACCGTATCCGGACCAACCCTAACCCAAACCACGACAACCGAACCTCATCCCAAACCTCCAAAACGTGAAGCCAACAAGAAAGGGCTGACCTCAAGCTCAGACCAAGAAGCCCCCAAAACTCCAGACCCCAAGACCCTTAGAAGACTGGCTCAGAATCGAGAGGCTGCTAGAAAAAGCAGGCTGAGAAAAAAGGCGTATGTTCAGCAGCTAGAATTGAGTAGGATTAAGCTCACGCAGCTGGAACAAGAGCTACAAAGAGCAAGAACTCAGGGTATGTTTCTCGGCGGTGGCGGTGGCGGCGCCGAGCACCACCGCTTGATGTGCGAGCTCCGAGCAGCGGTGCAAGAACATCTACGGGAAAACGAATTGCGGTTGTTTGTCGATAGTTGTCTGGCTCATTACGACGAGGTTCTAAACTTGAAGATGATGGTTGCTAGGTCCGACGTCTTCCACCTTGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCATGTGGATCGGCGACTTTAGGCCCTCCGAGCTTATTAAGATCATAATGGGTCAAGTAGAGCCATTAACAGAGCAACAACTAATGAACATTTGTGGACTGCAACAATCAACACAAGAGAGTGAGGAAGCATTGTCTCAAGGGCTTGAAGCCCTAAACCAGTCCTTATCAGACACCATCACCTCTGATTCATTGAGTACCCCTCCCAATATGGCTAACTATATGGGGCAGATGACCTTAGCCATCAACAAGCTCTCCTCTCTTGAAGCCTTTGTAAGACAGGCGGACAATTTAAGGCACCAAACGCTTCACCGGTTGCATCAAATGTTGACGACTCGTCAAGCCGCAAGGTGTTTGCTAGCCATTGCAGAGTATTTCCATCGACTTCGAGCTCTTAGTTCCTTGTGGTTGGCTCGTCCAAGGCAAGATTAA 1380 47.68 MEIVHHHQQEEEEEEEEEERRRRAWNQEEEQTPSLFSFQNNNFADQLPFSMNLPSISSNFITKDGGGDDLGELDQALFLYLDGQEPSSTTTTHHQSQNSSMRPPMLNIFPSQPMHVDPLPIKGSTAMINHGDSKIKPSEPSKELANQSSNGATVSGPTLTQTTTTEPHPKPPKREANKKGLTSSSDQEAPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMFLGGGGGGAEHHRLMCELRAAVQEHLRENELRLFVDSCLAHYDEVLNLKMMVARSDVFHLVSGMWKTPAERCFMWIGDFRPSELIKIIMGQVEPLTEQQLMNICGLQQSTQESEEALSQGLEALNQSLSDTITSDSLSTPPNMANYMGQMTLAINKLSSLEAFVRQADNLRHQTLHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2076078 2080404 + Cp4.1LG03g03830.1 Cpe03g00385 466102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00385 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 238 IPR004827 GO:0003700|GO:0006355
Cpe03g00385 459 MobiDBLite consensus disorder prediction 1 35 - -
Cpe03g00385 459 CDD bZIP_HBP1b-like 196 246 - -
Cpe03g00385 459 Gene3D - 195 245 - -
Cpe03g00385 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700|GO:0006355
Cpe03g00385 459 Coils Coil 8 28 - -
Cpe03g00385 459 Pfam Seed dormancy control 259 333 IPR025422 GO:0006351|GO:0043565
Cpe03g00385 459 ProSiteProfiles DOG1 domain profile. 241 455 IPR025422 GO:0006351|GO:0043565
Cpe03g00385 459 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 254 458 - -
Cpe03g00385 459 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 77 248 - -
Cpe03g00385 459 PANTHER TRANSCRIPTION FACTOR TGA9 254 458 - -
Cpe03g00385 459 PANTHER TRANSCRIPTION FACTOR TGA9 77 248 - -
Cpe03g00385 459 MobiDBLite consensus disorder prediction 140 167 - -
Cpe03g00385 459 MobiDBLite consensus disorder prediction 85 199 - -
Cpe03g00385 459 SMART brlzneu 192 275 IPR004827 GO:0003700|GO:0006355
Cpe03g00385 459 Pfam bZIP transcription factor 196 232 IPR004827 GO:0003700|GO:0006355
Cpe03g00385 459 Coils Coil 215 242 - -
Cpe03g00385 459 SUPERFAMILY Leucine zipper domain 196 238 IPR046347 GO:0003700|GO:0006355
Cpe03g00385 459 MobiDBLite consensus disorder prediction 85 106 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00385 Cpe08g01342 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00385 Cpe-Chr3:2076078 Cpe03g00448 Cpe-Chr3:2531607 7.00E-124 dispersed
Cpe03g00385 Cpe-Chr3:2076078 Cpe08g01336 Cpe-Chr8:9633425 1.62E-27 wgd
Cpe03g00385 Cpe-Chr3:2076078 Cpe08g01389 Cpe-Chr8:9987368 6.86E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49165 PF14144 DOG1 7.00E-31 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00385 K14431 - csv:101204923 679.478