Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00389 ATGGAGATTAGAGTGGGGACTGTTGGTGGATCCAGTCCAATCGGGCGTCAATCGGATGATTCTGGACTTGAGTCGCTTCAATTCTGCGAAGAAATTCAGGGGTTGATGACAATTCCGGCGGAAAATGCTAGTTCCTTTACGGCACTTCTGGAACTTCCGGCGACGCAGGCTTTAGAGCTTCTCCACTCACCGGATTCCGCCGGTGGTGCGACGGCGGCGGTTGTGACGGATGATTCCGTTCCGAAACCCTACTTCAGTGCCTTCAATTGCAATTTGACGTTCCCGACGAACTCGGCTCTAATTGAACGCGCTGCCAAATTCTCTGTCTTAGCCGAAGAGCATTCGCCGGATACGACAAGTAAAGTGGCGTTGAATTTGGAGAAGGTGAAGAACGAGCCCACCACTGAAACCGATTCGAACCCTAATCCGTTGCAGACATTAATCTCCGATCCGGCGGTGGAGAACACGAACCAGAGATCGACGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCAACGAAGAAGAGCAAGAACGAAAGCAGCGAGGCGGCTGAAAAGCTTCCTTACATCCATGTCCGAGCTCCCCGTGGTCAAGCGACGGACAGCCATAGCCTAGCAGAGCGAGCGAGGAGAGAGAAAATCAATGCTCGGATGAAGCTTCTTCAAGAACTGGTCCCTGGATGCAATAAGTTCATGTTGGGCCCTTTTAGTTTTGTGGATATTATCATGCCAAGAGGTTTCACTTTATTAAGTGCTGAAACAGCTCAAATCTCAGGTACAGCCTTAGTGTTGGATGAAATCATCAACCATGTTCAATCACTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCAGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCGATACTGGAAAGCAACTTTCCGAGCATGGTTGCGCCGTTGATGTGGCCAGAAATCCCAGTAAATGGAACCAGACAACAATATCAACAACAATGGCATTTCGACGCTGCAGTTAACCAGCGAGCGTGGGCGATGGATGAACATAATCATCATAATTTCAGCACCCCCGAAAACTCTCTTTTAAGTTACGACTCTTCAGCGAATTCAGGTAATAAAGAGGTCTTAGAAAATAGCAATACTGGAAATATGAGAACTGAATTGAAACTAAGTTGA 1191 47.77 MEIRVGTVGGSSPIGRQSDDSGLESLQFCEEIQGLMTIPAENASSFTALLELPATQALELLHSPDSAGGATAAVVTDDSVPKPYFSAFNCNLTFPTNSALIERAAKFSVLAEEHSPDTTSKVALNLEKVKNEPTTETDSNPNPLQTLISDPAVENTNQRSTKRKEREKKGKGSTKKSKNESSEAAEKLPYIHVRAPRGQATDSHSLAERARREKINARMKLLQELVPGCNKFMLGPFSFVDIIMPRGFTLLSAETAQISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPILESNFPSMVAPLMWPEIPVNGTRQQYQQQWHFDAAVNQRAWAMDEHNHHNFSTPENSLLSYDSSANSGNKEVLENSNTGNMRTELKLS 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2096059 2100121 + Cp4.1LG03g03870.1 Cpe03g00389 466106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00389 396 PANTHER TRANSCRIPTION FACTOR BHLH60 20 377 - -
Cpe03g00389 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 294 IPR036638 GO:0046983
Cpe03g00389 396 MobiDBLite consensus disorder prediction 1 20 - -
Cpe03g00389 396 Pfam Helix-loop-helix DNA-binding domain 203 251 IPR011598 GO:0046983
Cpe03g00389 396 MobiDBLite consensus disorder prediction 131 191 - -
Cpe03g00389 396 Gene3D - 199 287 IPR036638 GO:0046983
Cpe03g00389 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 199 275 IPR011598 GO:0046983
Cpe03g00389 396 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 20 377 IPR024097 GO:0006355
Cpe03g00389 396 MobiDBLite consensus disorder prediction 135 156 - -
Cpe03g00389 396 MobiDBLite consensus disorder prediction 360 396 - -
Cpe03g00389 396 MobiDBLite consensus disorder prediction 172 187 - -
Cpe03g00389 396 SMART finulus 205 281 IPR011598 GO:0046983
Cpe03g00389 396 Coils Coil 265 285 - -
Cpe03g00389 396 CDD bHLH_AtBPE_like 189 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00389 Cpe-Chr3:2096059 Cpe13g00466 Cpe-Chr13:4893153 1.40E-37 dispersed
Cpe03g00389 Cpe-Chr3:2096059 Cpe04g00116 Cpe-Chr4:1039875 6.14E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49167 PF00010 HLH 6.80E-05 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00389 - - csv:101205014 563.533