Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00391 ATGGATGACCCTTCCACTAACTTCTTCACAAATCTCTTCAAATTCAACCCTTCTCCACCAAACCCTCATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCCTACTTCCTCCCCACTCACCTCCACGCGCCGCCGTCCTCTCCTCCTCTCCGTCAAGCTCTTCCTCTCCTCCGCCTCAGCCCCACCAGATCATCCCAAAACAACAACCCCCCACAAAATTTCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCGGCCGCCGCCAACGTTTCCGTGACTGTTGCACTCCACATAGGGTTACCAAGCCCTAGCGCCTCAGAAATGGCAACCCTTTTGCTGTCTAGTAATCAAAATCAAGAGGAAGAAGACGACGACGAAGACGACGAAGAACACGAAGAACACGAATTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGCAGCCATTAGTGGACTATGTTTAAGCAATAGCCGACTCAACAAAGGACAATATTGGATCCCAACACCTTCACAAATCCTCATTGGTCCTACTCAATTCTCTTGTCCTGTTTGTTTCAAAACCTTCAATAGATATAACAACATGCAGATGCACATGTGGGGGCATGGCTCGCAATACAGGCGAGGGCCAGAATCATTGAGAGGCACACAGCCAACAGGGATGCTTAGGCTGCCATGCTATTGCTGCTCGCCAGGGTGCCGCAACAACATCGACCATCCACGAGCCAAGCCCTTGAAGGACTTCAGAACCCTTCAAACTCACTACAAACGCAAGCATGGGATCAAGCCGTTCATGTGTAGGAAGTGTGGGAAAGCCTTTGCTGTTAGAGGGGATTGGAGGACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCACAAGAGATCCCTTAAAGACCATATCAAGGCCTTTGGCAATGGCCATGCTGCTTATAATAATTCTAATGCTAATAACAATCCCGATCATCGTCATCGCCATCATCATCATCGTCATCATCGTCATCACGGGTTCGATGAAGAGGAGGACCCGGCTTATTCGGAAGTCGAACAAGATCATGATTGA 1080 49.17 MDDPSTNFFTNLFKFNPSPPNPHPPPPPPPPPPPYFLPTHLHAPPSSPPLRQALPLLRLSPTRSSQNNNPPQNFSSSSSSSSAAAAANVSVTVALHIGLPSPSASEMATLLLSSNQNQEEEDDDEDDEEHEEHELEEEEEEEEEEVAAISGLCLSNSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNNSNANNNPDHRHRHHHHRHHRHHGFDEEEDPAYSEVEQDHD 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2114959 2117368 - Cp4.1LG03g03640.1 Cpe03g00391 466108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00391 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 17 51 - -
Cpe03g00391 359 SUPERFAMILY beta-beta-alpha zinc fingers 245 283 IPR036236 -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 58 80 - -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 1 16 - -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 1 80 - -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 117 144 - -
Cpe03g00391 359 Gene3D Classic Zinc Finger 223 311 - -
Cpe03g00391 359 Coils Coil 118 152 - -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 340 359 - -
Cpe03g00391 359 SMART c2h2final6 179 201 IPR013087 -
Cpe03g00391 359 SMART c2h2final6 263 283 IPR013087 -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 314 359 - -
Cpe03g00391 359 Gene3D Classic Zinc Finger 178 201 - -
Cpe03g00391 359 PANTHER ZINC FINGER PROTEIN WIP2 1 330 IPR043584 GO:0003700|GO:0010468
Cpe03g00391 359 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Cpe03g00391 359 MobiDBLite consensus disorder prediction 113 144 - -
Cpe03g00391 359 PANTHER ZINC FINGER PROTEIN WIP2 1 330 - -
Cpe03g00391 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 283 IPR013087 -
Cpe03g00391 359 SUPERFAMILY Formin homology 2 domain (FH2 domain) 24 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00391 Cpe08g01384 CCT
Cpe03g00391 Cpe08g01384 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00391 Cpe-Chr3:2114959 Cpe10g01159 Cpe-Chr10:8500987 9.14E-136 dispersed
Cpe03g00391 Cpe-Chr3:2114959 Cpe08g01384 Cpe-Chr8:9954659 1.01E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49168 None None None None Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00391 - - csv:101208110 445.662