Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00398 ATGAAGAACAAAACCGAATCTGCTTCTACTTCATCTCTTGCTTGGCGTTGGACAATCGAAGCCCTTGCAAGTTTCGAGGAAGTGAAACCATCTCTATTACATGATGTAATTGATAACGTTTCAGAATTACTTGACGGTACTAGAAAGAATGCCGGGGAGATGGTTGCATTGAAATGCTTGGAGGGTTTGTTTGGTTCTTTAAATTATATTGGAGAAAATGTTCTTCCTGTTCAAGAATCAAAAGTTATGTTTGATTCATCTGAGAGTTGTGAAGATGTTTTTAAACGCATTTATAAGGAGACTCCAAAATCTTCCTTAAGAGTGGCTGGACCAGATTTGTTAAAATGGGATGTTAGATCCTTTACTGACCAAAAAAGAGCATCCATGCGTTGCACATTACATAAGCTGAAAGATGCAATTCTCGATGGTACACATCCTTATGCTGATTTCTTAATGCAAAAGAGTGGGTTAACACCCATAAATAAGAGGGATAACATTTGTCTGAATAATGAGGATTGTATCGAGCTCAGCGGGAGACTTGATATTAGCTCCTCTGGTCCTCGAGGCCAAAATGAGAAGGGTAAAGGAAGCCCTTTACTTGAGGATGATAGAAGAATATCAGTGGATCAATCAGGGATTCCTTGTTATACTATGCCGGCTAGTACACGAGATGATGAGATGCTGGAAGTTGTTTGTGTCGAGAAAGTGAAAGATGGAAGTGAACTGCCTTTTGAACCAAAAACATCTAATCCTTCTCCTGCTGAAGGAAACCTTCATAACACCAGCCCTGACAATTCCAAGTGTGACTCTGGGCATGATTATCGTGTAAATGAAACAAATACTATGTCTCCTAGTGGATTTATGTCAAAGACTGTTGCTACAAATATGGAGGTTGGTGTGTATCCGGATGTGAAAGAGAAAGATCTGTTAAGTGATAGTGATGGATATCATGAAACAATAGATATTGCCACGAGAAAAAAAGAATTTCTTAGTTCGCAATGTATGGTCGATCACGATTCTTTTCCATTAGCTGACAGTAGAGTTCTTGCAGTTTGTGTGAAATGTAATGAGGGTGGTCAGTTGTTGTGTTGTAACATTAGTGATTGTCCTTTGGTGGTTCATGCCAAGTGCTTGAGTTCCTCGGCTAGTATGACCGATGAAGGTGACTTTTGTTGTCCTTTCTGCTTGTATTCACTTGCTATATCAGAATACCTCGAAGCTAAGAAGCACGTTGCATCGGTAAAAAAAAATGTTGCTTCTTTTTTTCGTACTGCTTTGGGACATCAATCAGCAGTTCTTCAAGAGGTATTGCAACAAAAGGATGTTGACGCTTCACAAAGAGCTGTAGTTGAGGATGTTGCTAAAATTTGTGAAGATGTGGACTTGGAAAGTAAAGACAATCAAGTAAGTCTAGATGGAGAACGTGTAAACGAAGTTGTTGACTATCAATCGACAACAGATACAGATACCGAGCAAATGACAGAGCTATCAAAACCATTGCATATTGCCAATTCCAATCATAGACAAAACAAGGCAAGTCCTTCGAGAGTAGCATCTGATGCTTTATTAGGCCAGGAAAATGGCTACGAATTGGTGGACCAAGAGTGTCAAGGCAATACAGTTGCAGGTGTGGTGGACCAAAAGTGTCGAGGAAATGTTGCAGAACAGGAAGATGGTCAAAAAGACACCGAGCAGCATGACATTTACGAAATTCTCCATGAAGGTCGTGGGCCAGTTGAACCAGCGGCTACGCAAAATGGTTTACAGTACCAAACTGATGACAGCGAAGGCAAAGCTGCTCGTGCAATTATCACTGAAGGAGAAAAATCTTCTGATGATGGCAATGACGAGTCTATCATTTCTAGATACTCCATAAGATTTCGACAGAAATGTCATCAGTTAGTTTCTTCATAG 1914 40.13 MKNKTESASTSSLAWRWTIEALASFEEVKPSLLHDVIDNVSELLDGTRKNAGEMVALKCLEGLFGSLNYIGENVLPVQESKVMFDSSESCEDVFKRIYKETPKSSLRVAGPDLLKWDVRSFTDQKRASMRCTLHKLKDAILDGTHPYADFLMQKSGLTPINKRDNICLNNEDCIELSGRLDISSSGPRGQNEKGKGSPLLEDDRRISVDQSGIPCYTMPASTRDDEMLEVVCVEKVKDGSELPFEPKTSNPSPAEGNLHNTSPDNSKCDSGHDYRVNETNTMSPSGFMSKTVATNMEVGVYPDVKEKDLLSDSDGYHETIDIATRKKEFLSSQCMVDHDSFPLADSRVLAVCVKCNEGGQLLCCNISDCPLVVHAKCLSSSASMTDEGDFCCPFCLYSLAISEYLEAKKHVASVKKNVASFFRTALGHQSAVLQEVLQQKDVDASQRAVVEDVAKICEDVDLESKDNQVSLDGERVNEVVDYQSTTDTDTEQMTELSKPLHIANSNHRQNKASPSRVASDALLGQENGYELVDQECQGNTVAGVVDQKCRGNVAEQEDGQKDTEQHDIYEILHEGRGPVEPAATQNGLQYQTDDSEGKAARAIITEGEKSSDDGNDESIISRYSIRFRQKCHQLVSS 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2167771 2170565 - Cp4.1LG03g03660.1 Cpe03g00398 466115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00398 637 MobiDBLite consensus disorder prediction 239 271 - -
Cpe03g00398 637 MobiDBLite consensus disorder prediction 179 204 - -
Cpe03g00398 637 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 629 - -
Cpe03g00398 637 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 629 - -
Cpe03g00398 637 ProSitePatterns Zinc finger PHD-type signature. 352 395 IPR019786 -
Cpe03g00398 637 SUPERFAMILY FYVE/PHD zinc finger 349 399 IPR011011 -
Cpe03g00398 637 MobiDBLite consensus disorder prediction 245 265 - -
Cpe03g00398 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 441 IPR013083 -
Cpe03g00398 637 SMART PHD_3 351 396 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00398 Cpe08g01382 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00398 Cpe-Chr3:2167771 Cpe04g00663 Cpe-Chr4:6738502 1.52E-12 dispersed
Cpe03g00398 Cpe-Chr3:2167771 Cpe08g01382 Cpe-Chr8:9925491 1.29E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00398 - - cmo:103486808 566.614