Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00399 ATGAATAAATTACTGGAATCTTATTCTGCTCCACCCTTGGACTCAACCATGAATAACTTGACTGTTGAAACGGAAGATGCCTTTTCGAGCTTGCTTGAGCTTGCTGCTAATGATGACGTTGATGCCTTCAAGAGATCGATTGAGCGTGATCTTTCTGGTATTGATGAGATTGGTTTCTGGTATGGTCGGTTACGAGGCTCGAAGCAGATGACTAATGAGCAGAGAACTCCTTTAATGGTTGCTGCTACTTATGGTAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTGAACCGCACTGTTGGACTTGATAGAAGCACTGCCCTTCACTGTGCAGCCTCCGGTGGGGCTGCAAATGCTGTAGATGTAGTGAAGCTGCTCTTAGCTGCTGGTGCTGATCCTAATATGGTTGATGGGAATGGACATCGACCGGTTGATGTGGTTGTTGCCCCACTAAGGCACGCTGAGCTTAAATCAACACTTACTGAACTTCTTAAGACAAATGGTTTCTCTGGTGATGGAAATCTTGATGTTTTAACAGGTGTGAGAAATTCTCTATCTCCTCGCCCTTCGTCTCCTCTGAATGCTCCCTCGTTCACATCGGAGTTAGTTTCATCTCCAACAAAGTCGAAACTAAGTGATTTTTCAATGTATCCTGCATCTGAGAAGAAAGAATACCCTGTTGATCTTTCTCTTCCAGATATCAAGAACAGTATCTACTCAACTGATGAATTCCGAATGTATTCGTTCAAGGTTCGACCATGCTCACGTGCCTACTCTCATGATTGGACCGAGTGTCCCTTTGTCCACCCTGGAGAAAATGCGAGGAGGAGGGATCCTAGAAAATTCCATTATAGCTGTGTAACCTGTCCTGATTTTCGGAAGGGCGCTTGCAGACGGGGAGATATGTGCGAATATGCTCATGGGGTGTTTGAGTGTTGGCTACACCCAGCACAATATCGAACCCGCCTTTGCAAAGATGGCACGAATTGCTCAAGGAGAGTTTGCTTCTTTGCACACACCACTGAGGAACTGCGACCTCTGTATGTTTCGACTGGCTCTGCTGTTCCCTCACCACGTTCTTGTACTTCTGGGGCTTCTGCTATGGATTATACTACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCGGTCCCTGTGATGTCTCCATCACCGTTCACTCCTCCGATGTCTCCATCTGCCAATGGCATGTCTCATCCGTCCGTGGCTTGGCCCCAACCAAATAGTTCATCTCCCAGATACTCTGATCAAGCTCTGTCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCAGTTATCAATCAGTTTCAGCAGCAACAGAATATGTTGTCACCAATCAATACAAATTTCTCTCCTAAAAATGTTGATCATCCTCTATTGCAAGCCTCTTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCCCCCATCTCTCCAGTGGGCTCACGCTTGTCCATGTTAGCTCAAAGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCCCGTGAACTCGGTGCCAATTCTGCTTCTATTGTTGGTTCCCCTGCAAGCTCTTGGTCTAAATGGGGACCCTCTAATGGAAGGCCTGACTGGGCAGTCAATGCGGATGAAATGGGTAAACTTCGACGTTCATCATCATTTGAGCTCGGGAACAATGGCGAAGAGCCAGATTTATCATGGGTTCAATCACTAGTGAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCAAATTTGGGCGGCGATAGTTTCGTTTCTGGTGAGAGTTCTAACGTGAACTCGCAAATGGAGTCAGTCGATCATGCTGCATTAGGAGCATGGCTGGAACAAATGCAGCTCGATCATCTCGTCGCGCTACAGAACTAA 1917 46.37 MNKLLESYSAPPLDSTMNNLTVETEDAFSSLLELAANDDVDAFKRSIERDLSGIDEIGFWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRTVGLDRSTALHCAASGGAANAVDVVKLLLAAGADPNMVDGNGHRPVDVVVAPLRHAELKSTLTELLKTNGFSGDGNLDVLTGVRNSLSPRPSSPLNAPSFTSELVSSPTKSKLSDFSMYPASEKKEYPVDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVTCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTTEELRPLYVSTGSAVPSPRSCTSGASAMDYTTVMNLLPGSPSSVPVMSPSPFTPPMSPSANGMSHPSVAWPQPNSSSPRYSDQALSSAVFSPTHKSAVINQFQQQQNMLSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPPISPVGSRLSMLAQREKQQQFRSLSSRELGANSASIVGSPASSWSKWGPSNGRPDWAVNADEMGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNLGGDSFVSGESSNVNSQMESVDHAALGAWLEQMQLDHLVALQN 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2174527 2177988 - Cp4.1LG03g03670.1 Cpe03g00399 466116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00399 638 MobiDBLite consensus disorder prediction 402 428 - -
Cpe03g00399 638 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Cpe03g00399 638 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 420 635 - -
Cpe03g00399 638 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 17 419 - -
Cpe03g00399 638 MobiDBLite consensus disorder prediction 393 428 - -
Cpe03g00399 638 MobiDBLite consensus disorder prediction 508 540 - -
Cpe03g00399 638 SUPERFAMILY Ankyrin repeat 20 153 IPR036770 -
Cpe03g00399 638 SMART ANK_2a 108 140 IPR002110 GO:0005515
Cpe03g00399 638 SMART ANK_2a 73 103 IPR002110 GO:0005515
Cpe03g00399 638 Pfam Ankyrin repeats (3 copies) 71 142 IPR002110 GO:0005515
Cpe03g00399 638 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515
Cpe03g00399 638 PANTHER UNKEMPT FAMILY MEMBER 420 635 IPR045234 -
Cpe03g00399 638 PANTHER UNKEMPT FAMILY MEMBER 17 419 IPR045234 -
Cpe03g00399 638 MobiDBLite consensus disorder prediction 584 607 - -
Cpe03g00399 638 SMART c3hfinal6 323 346 IPR000571 GO:0046872
Cpe03g00399 638 SMART c3hfinal6 288 314 IPR000571 GO:0046872
Cpe03g00399 638 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 313 IPR000571 GO:0046872
Cpe03g00399 638 MobiDBLite consensus disorder prediction 508 539 - -
Cpe03g00399 638 PRINTS Ankyrin repeat signature 127 141 IPR002110 GO:0005515
Cpe03g00399 638 PRINTS Ankyrin repeat signature 74 89 IPR002110 GO:0005515
Cpe03g00399 638 Gene3D - 288 351 - -
Cpe03g00399 638 ProSiteProfiles Zinc finger C3H1-type profile. 293 315 IPR000571 GO:0046872
Cpe03g00399 638 Gene3D - 24 172 IPR036770 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g00399 Cpe08g01381 CCT
Cpe03g00399 Cpe08g01381 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00399 Cpe-Chr3:2174527 Cpe03g00864 Cpe-Chr3:5448764 5.73E-66 dispersed
Cpe07g00542 Cpe-Chr7:3599148 Cpe03g00399 Cpe-Chr3:2174527 2.49E-51 dispersed
Cpe03g00399 Cpe-Chr3:2174527 Cpe08g01381 Cpe-Chr8:9920910 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49170 PF12796 Ank_2 5.80E-10 CL0465 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00399 - - csv:101207646 981.474