Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00415 ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCGCCTCCTCCGGTTGTCGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGAGACCTGGGGTCCGGCGAACCTGCGAGAACCCTGAAGCGGCCGCGCTTGGTCTGGACTCCACAGCTCCATAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGTGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGCGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGACCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCTTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAATTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGATTTCAGAAACAATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCGCCTCCTCCGGTTGTCGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGAGACCTGGGGTCCGGCGAACCTGCGAGAACCCTGAAGCGGCCGCGCTTGGTCTGGACTCCACAGCTCCATAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGTGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGCGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGACCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCTTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAATTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAACGATTAA 1659 54.31 MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFATSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKISETMREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFATSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2320052 2322658 + Cp4.1LG03g04120.1 Cpe03g00415 466132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00415 552 MobiDBLite consensus disorder prediction 261 282 - -
Cpe03g00415 552 MobiDBLite consensus disorder prediction 50 65 - -
Cpe03g00415 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 366 417 IPR017930 -
Cpe03g00415 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 144 IPR017930 -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 262 - -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 274 552 IPR044841 GO:0003700|GO:0006355
Cpe03g00415 552 Gene3D - 85 147 - -
Cpe03g00415 552 Gene3D - 358 420 - -
Cpe03g00415 552 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 362 414 IPR006447 GO:0003677
Cpe03g00415 552 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 141 IPR006447 GO:0003677
Cpe03g00415 552 SUPERFAMILY Homeodomain-like 358 418 IPR009057 -
Cpe03g00415 552 SUPERFAMILY Homeodomain-like 85 145 IPR009057 -
Cpe03g00415 552 MobiDBLite consensus disorder prediction 520 541 - -
Cpe03g00415 552 MobiDBLite consensus disorder prediction 41 67 - -
Cpe03g00415 552 Pfam Myb-like DNA-binding domain 365 413 IPR001005 -
Cpe03g00415 552 Pfam Myb-like DNA-binding domain 92 140 IPR001005 -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 274 552 - -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 262 IPR044841 GO:0003700|GO:0006355
Cpe03g00415 552 MobiDBLite consensus disorder prediction 247 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00415 - - - csv:101216059 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00415 Cpe-Chr3:2320052 Cpe19g00248 Cpe-Chr19:2031934 7.76E-109 dispersed
Cpe10g01100 Cpe-Chr10:7054606 Cpe03g00415 Cpe-Chr3:2320052 4.72E-109 transposed
Cpe03g00415 Cpe-Chr3:2320052 Cpe08g01347 Cpe-Chr8:9711536 4.28E-120 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe15g00191 . 154 356 G2-like Transcription Factor Family AT5G16560 52.2 2.6e-42 170.2
Cpe05g00160 . 168 353 G2-like Transcription Factor Family AT5G16560 53.8 2.9e-41 166.8
Cpe07g00452 CCT,CST 13 152 G2-like Transcription Factor Family AT5G42630 58.3 3.1e-37 152.5
Cpe13g00409 CCT 20 255 G2-like Transcription Factor Family AT1G25550 50.6 3.6e-51 199.1
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT1G25550 52.2 2.5e-44 176.4
Cpe01g01799 . 24 261 G2-like Transcription Factor Family AT3G25790 51.8 1.0e-36 151.0
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT5G05090 54.4 2.2e-74 276.2
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 2.3e-71 266.2
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT5G05090 52.3 9.6e-70 260.8
Cpe03g00415 . 1 265 G2-like Transcription Factor Family AT5G05090 57.9 4.5e-67 251.9
Cpe03g01593 CST 12 313 G2-like Transcription Factor Family AT4G13640 56.5 9.0e-61 231.1
Cpe03g01593 CST 12 269 G2-like Transcription Factor Family AT3G24120 61.7 5.3e-77 285.0
Cpe08g00397 CST 12 335 G2-like Transcription Factor Family AT3G24120 53.2 4.5e-76 282.0
Cpe15g00910 CST 18 162 G2-like Transcription Factor Family AT3G24120 58.5 1.5e-39 160.6
Cpe15g00178 . 4 152 G2-like Transcription Factor Family AT3G24120 52.5 2.4e-37 153.3
Cpe19g00909 . 31 149 G2-like Transcription Factor Family AT3G24120 68.0 2.4e-37 153.3
Cpe11g00707 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 4.7e-37 152.5
Cpe05g01028 CST 1 160 G2-like Transcription Factor Family AT1G79430 75.3 3.9e-58 222.6
Cpe08g00397 CST 26 196 G2-like Transcription Factor Family AT1G79430 56.5 1.5e-38 157.5
Cpe03g01593 CST 41 205 G2-like Transcription Factor Family AT1G79430 59.4 6.5e-37 152.1
Cpe10g00724 . 84 317 G2-like Transcription Factor Family AT2G01060 51.6 6.2e-52 201.4
Cpe10g01100 . 1 303 G2-like Transcription Factor Family AT3G10760 60.7 4.4e-88 322.0
Cpe19g00248 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 4.4e-88 322.0
Cpe08g01347 . 1 288 G2-like Transcription Factor Family AT3G10760 59.5 6.0e-85 311.6
Cpe03g00415 . 1 278 G2-like Transcription Factor Family AT3G10760 56.7 8.6e-76 281.2
Cpe08g01347 . 1 287 G2-like Transcription Factor Family AT2G40970 50.5 3.4e-61 232.3
Cpe19g00248 . 1 204 G2-like Transcription Factor Family AT2G40970 61.6 5.5e-59 224.9
Cpe03g00415 . 1 195 G2-like Transcription Factor Family AT2G40970 59.4 9.3e-59 224.2
Cpe10g01100 . 1 203 G2-like Transcription Factor Family AT2G40970 58.8 1.2e-58 223.8
Cpe05g00834 . 108 367 G2-like Transcription Factor Family AT4G28610 50.2 6.2e-52 202.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001839 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49172 PF00249 Myb_DNA-binding 5.20E-08 CL0123 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe03g00415 Cpe_Chr03 FPKM 0.872265 0.68735 15.384757 15.318537 4.571058 3.082721 5.386552 4.921965 3.071841 3.794071