Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00415 ATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCGCCTCCTCCGGTTGTCGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGAGACCTGGGGTCCGGCGAACCTGCGAGAACCCTGAAGCGGCCGCGCTTGGTCTGGACTCCACAGCTCCATAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGTGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGCGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGACCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCTTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAATTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGATTTCAGAAACAATGAGGGAAGAGGATTCAAATTGGTTCTCAAAATGGGAAGAGGAGCTTCCTTCTCCTGAGGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTGTGGCATTTGACATCTCGAGCTCAAATGCTGCCATTGATAACAACAGCCATCCGCCGCCGCCGCCTCCGCCTCCTCCGGTTGTCGCTCAGCCGAGTTCTGCTGATTTTGGGGACTGTGGAGACCTGGGGTCCGGCGAACCTGCGAGAACCCTGAAGCGGCCGCGCTTGGTCTGGACTCCACAGCTCCATAAGCGATTTGTTGATGCTGTCGCCCATTTGGGGATAAAAAATGCTGTCCCGAAAACCATAATGCAGTTGATGAGTGTCGATGGGTTAACTCGTGAAAACGTAGCTAGCCATTTGCAGAAATACCGTCTTTATTTGAAGCGTATGCAGGGGATTTCCAGCGGCAGCGGTGGCGGTGGCGGTGCTAATGGCGCCGCCGCTTCAGATCTCGCTACTGATCATTTGTTCGCGACCTCCCCTGTTCCGCCTCATTTTCTTCACTCTTCTCGGACTAATTCCGACCATTTCTTGCCTTTTGTACCCGTTGGAGCTCTGCAGCAGCACCACCACATGGCTGCCGCCGCCGCCGCCGCTCAGTACCACCGGCAAGTGGCTCAATTTGGGTCGCCGCCAAATGGGCAATTTGAGCGTCCGTTTCTGGCTCGGCCTATTCACCGGCTTGGGGCTCCGGTGAGTAACCCGGCGACGAATCACAGCGAAGATTTGGATTCGGGTAATGCAACAGAAGGGAGGAAGGTTCTTACTCTTTTCCCCACCGGAAACGATTAA 1659 54.31 MREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFATSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKISETMREEDSNWFSKWEEELPSPEELMPLSQTLITPDLAVAFDISSSNAAIDNNSHPPPPPPPPPVVAQPSSADFGDCGDLGSGEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISSGSGGGGGANGAAASDLATDHLFATSPVPPHFLHSSRTNSDHFLPFVPVGALQQHHHMAAAAAAAQYHRQVAQFGSPPNGQFERPFLARPIHRLGAPVSNPATNHSEDLDSGNATEGRKVLTLFPTGND 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2320052 2322658 + Cp4.1LG03g04120.1 Cpe03g00415 466132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00415 552 MobiDBLite consensus disorder prediction 261 282 - -
Cpe03g00415 552 MobiDBLite consensus disorder prediction 50 65 - -
Cpe03g00415 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 366 417 IPR017930 -
Cpe03g00415 552 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 144 IPR017930 -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 262 - -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 274 552 IPR044841 GO:0003700|GO:0006355
Cpe03g00415 552 Gene3D - 85 147 - -
Cpe03g00415 552 Gene3D - 358 420 - -
Cpe03g00415 552 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 362 414 IPR006447 GO:0003677
Cpe03g00415 552 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 89 141 IPR006447 GO:0003677
Cpe03g00415 552 SUPERFAMILY Homeodomain-like 358 418 IPR009057 -
Cpe03g00415 552 SUPERFAMILY Homeodomain-like 85 145 IPR009057 -
Cpe03g00415 552 MobiDBLite consensus disorder prediction 520 541 - -
Cpe03g00415 552 MobiDBLite consensus disorder prediction 41 67 - -
Cpe03g00415 552 Pfam Myb-like DNA-binding domain 365 413 IPR001005 -
Cpe03g00415 552 Pfam Myb-like DNA-binding domain 92 140 IPR001005 -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 274 552 - -
Cpe03g00415 552 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 262 IPR044841 GO:0003700|GO:0006355
Cpe03g00415 552 MobiDBLite consensus disorder prediction 247 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00415 Cpe-Chr3:2320052 Cpe19g00248 Cpe-Chr19:2031934 7.76E-109 dispersed
Cpe10g01100 Cpe-Chr10:7054606 Cpe03g00415 Cpe-Chr3:2320052 4.72E-109 transposed
Cpe03g00415 Cpe-Chr3:2320052 Cpe08g01347 Cpe-Chr8:9711536 4.28E-120 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49172 PF00249 Myb_DNA-binding 5.20E-08 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00415 - - csv:101216059 402.905