Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00441 ATGGAAATAGACCACGCCGAGCTTAGCACTGAGCAGGTTCTCACAAGGGACATTCCATGGGAGACATACATGACTACGAAACTTATCAGTGGAACAAGCCTTCAGCTGTTAAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCACAATTGTTGGATGATGATGGTCCAGCATATGTTCGATTATTTGTTAGCATCTTACGTGATATATTTAAGGAAGAAACAGTGGAATATGTTCTAGCATTAATCGACGAAATGCTGACAGCAAACCCAAAAAGAGCAAGATTGTTCCATGATCCTTCTCTTGCAAGCGAAGATGCTTATGAACCTTTCCTACGATTGCTTTGGAAGCGAAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTCTGATAGTGAGTGCTAGAAAGACGACTCATGATGGCAGTTCTGCAAATGATGATGTCACAAATTCCAAGATGAAAATTACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTATCGACTTCTATCAATTGCCTTTCAACTCTGCTGAAGGAACCAAAGGTCAGATCCTCCTTTATCCAGGCAGATGGAGTGAAATTGCTTATTCCTTTGATTTCTCCTGCATCGACCCAACAATCTACTCAGATTCTATATGAAACCTGTCTTTGTGTTTGGCTCTTATCATATTATGAGCCAGCAATTGAATTCTTGGCCACTTCTAGAACCCTTCCGAGACTCATTGATGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGAGTTGTTATTTTGACCTTGAGGAACTTACTCCACAAGGGAACATTTGGAGCTCAAATGGTCGGTCTCGGACTACCACAAATTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTCTGAGTCAACTGGAAGAGGGGCTGAAAGATAATATCAAGAAACTAAGTTCTTTTGACAAGTACAAGCAAGAAGTCCTTCTCGGGCATCTTGACTGGTCTCCTATGCACAAAGATGTAAATTTCTGGCGTGAAAATATTACAAGCTTCGAAGAGAACGACTTGAAGATATTGAGGGTCCTAATCACCATTCTGGACAGTTCCAGTGATCCAAGGGCTCTGGCAGTTGCATGTTTTGATCTTTCCCAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAGGTTACCAAATATGCCCTCCTCTGCATCCAGAGGCTCTTCCTAGGTGCCAAGTATGCCAGCTTTCTGCAGGCTTAA 1365 42.56 MEIDHAELSTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRLFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDPSLASEDAYEPFLRLLWKRNWFIQEKSCKILALIVSARKTTHDGSSANDDVTNSKMKITTIDDVLDGLVKWLCAQLKNPSHPSRAVSTSINCLSTLLKEPKVRSSFIQADGVKLLIPLISPASTQQSTQILYETCLCVWLLSYYEPAIEFLATSRTLPRLIDVVKSSTKEKVVRVVILTLRNLLHKGTFGAQMVGLGLPQIVQSLKSQAWSDEDLLEALSQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENITSFEENDLKILRVLITILDSSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2503213 2511810 - Cp4.1LG03g08550.1 Cpe03g00441 466158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00441 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 4 454 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cpe03g00441 454 SMART arm_5 243 284 IPR000225 GO:0005515
Cpe03g00441 454 SMART arm_5 198 242 IPR000225 GO:0005515
Cpe03g00441 454 SMART arm_5 404 444 IPR000225 GO:0005515
Cpe03g00441 454 CDD VATPase_H 4 448 - -
Cpe03g00441 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Cpe03g00441 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037
Cpe03g00441 454 Gene3D - 3 333 IPR011989 -
Cpe03g00441 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 4 454 - -
Cpe03g00441 454 Gene3D - 345 446 IPR038497 -
Cpe03g00441 454 Pfam V-ATPase subunit H 5 325 IPR004908 GO:0000221|GO:0046961|GO:1902600
Cpe03g00441 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221|GO:1902600
Cpe03g00441 454 PIRSF V-ATP_synth_H 1 453 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00441 Cpe-Chr3:2503213 Cpe19g00510 Cpe-Chr19:4350074 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00441 K02144 - csv:101217015 857.055