Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00448 ATGGGTAGTAGAACAGTGAAGGTTGGTGCCGACGATATAAACAAAAAGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACAGCCAATAATTCCATGGGTGCAGAGGGGAGCTCTATTCCTTCATCTCGGATTTCGGACTTAAGAACGCTCGAGCAAACTCTTGGATTTCACATAGAAAATGTAGACCTTACTAGAAATCCTTTGTATAATCAGATAAAGTCAAATAGTTCGACTCTGAACAACAACATCCAGTTTGGTTCTTTAATTAAGCCACTTGCATCCACTGATGTAAATCTGCCAACTGCTATCATGGGCTCTCAAACATTGCCATTACAGAAAGAATCAAATCCAAATTTGGTTTCTACGTCGGGTGGTCCTCATGAAAACTGGGGAGAGTCTAACATGGCCGACGTCAGCACAAGAACTGATACCTCCACGGATGACACAGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGTCGTGTACGATTCTAGCAACAAATCGAAAGAAAAAACACCTGATCAGAAGAGCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAACTTGAGCAAGAACTCCAGCGGGCCCGCCAGCAGGGTATATTTATTTCAAATTCTGGAGATCAAGCTCATTCAATGAGTGGAAATGGGGCCCTAGCGTTTGATGCAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTAATAAATGAGCTTAGAGCTGCAGTGAATTCACATGCGGGCGACACTGAACTTCGAACTGTCGTTGATAACGTGACTACACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCAGAGATCCTGAAGCTTCTTATAAACCAATTAGAGCCTTTGACTGAGCAGCAGCTAATGGGCATCTGTAACCTGCAACAATTATCACAACAAGCAGAAGATGCTCTCTCGCAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACATTGGCCAGTGGCACACCTGCAACGTCGGGATCGTCTGGGAATGTCGCAAACTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGAAGGCTTCCTACGCCAGGCTGATAATCTTCGTCAACAAACTCTTCAACAAATGCATCGCATATTGACAACCCGTCAGTCAGCTCGTGCGCTTCTTGCAATAAATGACTACTTCTCCCGCCTTAGAGCCCTCAGCTCTCTCTGGCTTGCACGGCCTCGAGAGTGA 1407 45.56 MGSRTVKVGADDINKKVNGMPSFVSSMPTANNSMGAEGSSIPSSRISDLRTLEQTLGFHIENVDLTRNPLYNQIKSNSSTLNNNIQFGSLIKPLASTDVNLPTAIMGSQTLPLQKESNPNLVSTSGGPHENWGESNMADVSTRTDTSTDDTDDKSQRLDKDQGNSLVVYDSSNKSKEKTPDQKSLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQAHSMSGNGALAFDAEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLINQLEPLTEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2531607 2540017 - Cp4.1LG03g08570.1 Cpe03g00448 466165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00448 468 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700|GO:0006355
Cpe03g00448 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Cpe03g00448 468 SMART brlzneu 179 242 IPR004827 GO:0003700|GO:0006355
Cpe03g00448 468 Pfam bZIP transcription factor 183 223 IPR004827 GO:0003700|GO:0006355
Cpe03g00448 468 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Cpe03g00448 468 MobiDBLite consensus disorder prediction 110 199 - -
Cpe03g00448 468 MobiDBLite consensus disorder prediction 145 160 - -
Cpe03g00448 468 Gene3D - 182 234 - -
Cpe03g00448 468 Coils Coil 202 229 - -
Cpe03g00448 468 ProSiteProfiles DOG1 domain profile. 248 465 IPR025422 GO:0006351|GO:0043565
Cpe03g00448 468 PANTHER TRANSCRIPTION FACTOR TGA9 63 468 - -
Cpe03g00448 468 MobiDBLite consensus disorder prediction 174 195 - -
Cpe03g00448 468 CDD bZIP_HBP1b-like 183 234 - -
Cpe03g00448 468 MobiDBLite consensus disorder prediction 110 144 - -
Cpe03g00448 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Cpe03g00448 468 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 63 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01797 Cpe-Chr1:14649876 Cpe03g00448 Cpe-Chr3:2531607 6.54E-168 dispersed
Cpe03g00385 Cpe-Chr3:2076078 Cpe03g00448 Cpe-Chr3:2531607 7.00E-124 dispersed
Cpe03g00448 Cpe-Chr3:2531607 Cpe13g00411 Cpe-Chr13:4453535 2.08E-147 dispersed
Cpe08g01336 Cpe-Chr8:9633425 Cpe03g00448 Cpe-Chr3:2531607 1.04E-46 dispersed
Cpe19g01073 Cpe-Chr19:7326883 Cpe03g00448 Cpe-Chr3:2531607 6.30E-09 dispersed
Cpe07g00106 Cpe-Chr7:547250 Cpe03g00448 Cpe-Chr3:2531607 0 transposed
Cpe20g00685 Cpe-Chr20:4812582 Cpe03g00448 Cpe-Chr3:2531607 4.85E-98 transposed
Cpe03g00448 Cpe-Chr3:2531607 Cpe08g01389 Cpe-Chr8:9987368 6.20E-17 wgd
Cpe03g00448 Cpe-Chr3:2531607 Cpe08g01342 Cpe-Chr8:9665720 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49175 PF14144 DOG1 2.20E-29 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00448 K14431 - csv:101219149 850.121