Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00470 ATGAAATCCCATTTCCACGTTCTTAACAAAAGCTCGAGAAGAATCCATGGAAGCCCACAGGATGATTGCCGGAGTTTTCTTGGTTTAACTGATTTTGAAGCTAAGTGCTCTGTTCTTAAATCCAACAACCCTTGTAACACCCAAGGCTATATAGATTATCTTTACATTTTCTATTGTCAGTATGGAAGTTTTAGCATTCTGGGGTATACTCTGCTGTTTCTGTGGCTTCTTGTGTTGTTCTATCTTCTGGGTAATACTGCCTCTGAATACTTTTGTTCTTCCCTTGAGAGCTTGTCAAAAGTGTTGAATCTGTCCCCTACAATTGCTGGTGTTACTCTGCTTTCTCTTGGCAATGGGGCACCCGATGTTTTTGCTAGCCTTGTTGCCTTTATGGGGGATGGAACTAGTGATATTGGATTGAATACTGTTCTTGGTGGAGCTTCGTTTGTTACCTGTGTCGTCGTCGGAATCATAAGCATTTTGCTGCGTCGGCGACGAATTAAGGTGAATAGGTCTGGCTTCATTAGAGATGTTTTGTTCTTCCTCTTGGTTCTTTTGTCTGTTTTCTTCATACTGCTTCATGGTCATATCAATCTATGGGGTGCCATTGGGTTTTCTTCCATGTATATTGTTTATGTTTTGGCTGTTTATGTCTCCCATGCTCAATGGTTGAGTTTTAGAAGTGGTGATATCTGTGAACCCCTTTTGAAAGAGCCACCAAAGGATGAGTTTGAGGGTGTAAATGAATCACGGTACAACGACGACAACAACGACGATAACGATGATGTTAGGATCGATGTATATGATCTCTGTTTTTGTCCAAGATTATCGCCTTCGTGTCTCGTTTTCCTTCGCATCCTTGAGATTCCTCTTTACTTGCCTAGAAGATTGACAATTCCAGCCATTGCTGAAGAAAACTGGTCTAGACCATATGCAGTTGCTTCAGTGATATTGGCTCCTCTTCTCTTATCTGTTCTATGGACCTTTCACCACCAAACCGACACGACACAGTCGAACCTGATCATCTGCGTCGTCGCTTTGCTGCTCGGGATTAGTTTTGGGATTGTTGCATTTGCAACAACTGAGAATTCAACCCCACCAAAGAAGTGCTTATTCCCTTGGCTAGCAGCTGGCTTCACCATGAGTTTAACATGGAGTTACATTCTAGCTCAGGAACTAGTAGGCCTATTGGTTTCACTTGGCTACATAATGAACATAAGCCCTTCAATCCTAGGACTTACCTTCCTAGCCTGGGGGAACTCTCTTGGGGATTTAGTTGCCAATGTGACCATGGCATTGAACGGCGGGCAGCGAGGCGCTCAAATCGCCATCTCCGGCTGCTATGCCGGTCCCATCTTCAACACTTTGTTCGGCCTAGGAATGTCCCTCGTCGGCGCGTCGTGGAAGAAGTATCCTCAGTCGATCGCCATCCCTCCCGACCCGTATGTCATGGAGACATTGGGGCTATTAGTCGGCGGGTTGCTTTGGGCACTCGTGGCCTTGCCAAGGCGAGAGATGAGGCTTGATGCAGTGTTGGGAGGAGGCCTTTTGGCTATCTACTTAACCTCTCTACTCTTAAGGCTGTTGCAAGCTTTTGCTTCCTCCCATTAG 1611 45.31 MKSHFHVLNKSSRRIHGSPQDDCRSFLGLTDFEAKCSVLKSNNPCNTQGYIDYLYIFYCQYGSFSILGYTLLFLWLLVLFYLLGNTASEYFCSSLESLSKVLNLSPTIAGVTLLSLGNGAPDVFASLVAFMGDGTSDIGLNTVLGGASFVTCVVVGIISILLRRRRIKVNRSGFIRDVLFFLLVLLSVFFILLHGHINLWGAIGFSSMYIVYVLAVYVSHAQWLSFRSGDICEPLLKEPPKDEFEGVNESRYNDDNNDDNDDVRIDVYDLCFCPRLSPSCLVFLRILEIPLYLPRRLTIPAIAEENWSRPYAVASVILAPLLLSVLWTFHHQTDTTQSNLIICVVALLLGISFGIVAFATTENSTPPKKCLFPWLAAGFTMSLTWSYILAQELVGLLVSLGYIMNISPSILGLTFLAWGNSLGDLVANVTMALNGGQRGAQIAISGCYAGPIFNTLFGLGMSLVGASWKKYPQSIAIPPDPYVMETLGLLVGGLLWALVALPRREMRLDAVLGGGLLAIYLTSLLLRLLQAFASSH 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2714883 2717273 + Cp4.1LG03g08500.1 Cpe03g00470 466187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00470 536 PANTHER CATION/CALCIUM EXCHANGER 2 11 534 - -
Cpe03g00470 536 Gene3D - 104 228 IPR044880 -
Cpe03g00470 536 Gene3D - 313 528 IPR044880 -
Cpe03g00470 536 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 11 534 - -
Cpe03g00470 536 Pfam Sodium/calcium exchanger protein 73 217 IPR004837 GO:0016021|GO:0055085
Cpe03g00470 536 Pfam Sodium/calcium exchanger protein 375 526 IPR004837 GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00470 Cpe-Chr3:2714883 Cpe04g01015 Cpe-Chr4:9056805 3.68E-52 dispersed
Cpe18g00071 Cpe-Chr18:1741193 Cpe03g00470 Cpe-Chr3:2714883 4.18E-52 transposed
Cpe03g00470 Cpe-Chr3:2714883 Cpe08g00684 Cpe-Chr8:5219935 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00470 K13754 - csv:101204766 914.45