Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00474 ATGGCTTCCTCGTCCTCTGATCCTGGCTTCAAACACGAACCAGGTTCTTGTAGTGCGGCGGCTGCTGCTGTTGCCGGAGGAGGAGCGGCGGAATCTTCGGAAGTTGTAATGGCGAATGATCAGCTTTTACTGTACAGAGGGTTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCCAAAGAGCGGATCAGTAAAATGCCTCCGTGTGCTGCTGGAAAAAGAAGTTCTATATACCGCGGAGTCACAAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACATGGAACCAGAACCAGAACAAAAAGGGAAAGCAAGGGGCATATGATGAAGAAGAGGCCGCTGCTAGGGCTTACGATTTGGCTGCGTTAAAATATTGGGGTCCTGGGACTCTTATTAACTTTCCAGTGACTGATTATTCAAGGGACCTTGAAGAAATGCAGAATGTTTCAAGAGAGGAATACCTTGCATCCCTAAGGAGAAAGAGCAGTGGATTCTCCAGGGGAATATCCAAATATCGAGGTCTCTCGAGTCGATGGGATCCTTCATTTAGTCGTGTGCCGGGCCCTGAGTATATCAACAGCATAAACTATGGTGCTGGAGATGATCAAGCAACAGAAGGTGAGTTCGTCCCAGGCTTCTGCATTGAAAAGAAGATTGACTTAACAAGTCACATTAAATGGTGGGGGCCCAACAAAACTCGAACGGCAAGTGCTGGCTCAAAGTCATCAGAAGAAGACAAACATAGTAGTTGTGCTGGAGAAGTTGGCAGTGAACTCAAAGCTCTGGGACAGACCACCCGTCCTACGGAGCCATATGAGATGCCCTGTTTGGGTACATTACATGATGTAAAGAAGACTACTTCCAGGGTCTCTGCTTTAAGCATCTTGTCACGTTCCGCAGCCTACAAGAGTTTGCAGGAGAAAGCTTTGAAATTACAGGAAATTAACAATGAGAATGATGAGAATGAAAATAAAAACACTGTTAACAAGATAGATCATGGGAAAGTGGTTGAAACACATACAAGTCATGGTGGTGATCCCAGCGAGAGATATGGGGTTGCTTTCGGAACAAGTGGTGGATTGCCACTTCAGAGAAATATGTTCCCCTTGACTTCTTTCTTAACTGCACCTCTTCTTAGTAGTTACAACACTGTTGATCCACTGGGAGATCCGATTCATTGGACATCTCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTGCAGCCGAGGTTACAAAAACGGAAACCTCTTCAACATACACTTTGTTTCAACCCGAGGAATAA 1293 45.4 MASSSSDPGFKHEPGSCSAAAAAVAGGGAAESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYSRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWDPSFSRVPGPEYINSINYGAGDDQATEGEFVPGFCIEKKIDLTSHIKWWGPNKTRTASAGSKSSEEDKHSSCAGEVGSELKALGQTTRPTEPYEMPCLGTLHDVKKTTSRVSALSILSRSAAYKSLQEKALKLQEINNENDENENKNTVNKIDHGKVVETHTSHGGDPSERYGVAFGTSGGLPLQRNMFPLTSFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRAAEVTKTETSSTYTLFQPEE 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2753857 2758055 + Cp4.1LG03g08520.1 Cpe03g00474 466191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00474 430 SMART rav1_2 77 144 IPR001471 GO:0003700|GO:0006355
Cpe03g00474 430 ProSiteProfiles AP2/ERF domain profile. 77 138 IPR001471 GO:0003700|GO:0006355
Cpe03g00474 430 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 24 428 - -
Cpe03g00474 430 MobiDBLite consensus disorder prediction 242 256 - -
Cpe03g00474 430 MobiDBLite consensus disorder prediction 236 257 - -
Cpe03g00474 430 Gene3D AP2/ERF domain 77 140 IPR036955 GO:0003700|GO:0006355
Cpe03g00474 430 MobiDBLite consensus disorder prediction 1 23 - -
Cpe03g00474 430 SUPERFAMILY DNA-binding domain 76 139 IPR016177 GO:0003677
Cpe03g00474 430 Pfam AP2 domain 78 130 IPR001471 GO:0003700|GO:0006355
Cpe03g00474 430 PANTHER BNAA03G19580D PROTEIN 24 428 - -
Cpe03g00474 430 Coils Coil 305 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g00474 Cpe-Chr3:2753857 Cpe01g01302 Cpe-Chr1:7828280 4.98E-56 dispersed
Cpe03g00474 Cpe-Chr3:2753857 Cpe08g00691 Cpe-Chr8:5282239 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49178 PF00847 AP2 5.10E-06 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00474 K09285 - csv:101206434 748.429