Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g00476 ATGAGTATAGAGAAGTATCTTCTGAAGGACTTTGAAGTTGAGCCGAAACGTCCTTCACCGGAAGCTTTGAGGAGATGGAGATCTGCCGTCTCTATCGTAAAAAATCGACGCCGAAGGTTCCGAAATACTGCAGATCTCGACAAACGCTCCGAAGCCGAGAAAAAGAAGCTCAAAATCCAGAAGGCAGCATTACAATTTATTGATGATGAGCTTGCATCCATAGTCCGTAGCCATGATTATAAGGCATTGAAATTCCATGGTGGTGTTGAAGGACTTTCAAGGAAAGTTTCTGTCGCACTAGATGCAGGTGTTAGTGAAAAGGATGTATCGAAGAGACAAGAGATTTATGGTTATAATCGTTACACAGAGAAGCCTTCCAGATCTTTTTTGGTGTTTCTATGGGAAGCATTACATGACGTGACATTAATCATCCTAATATTCTGTGCGCTTATTTCTTTAGGCGTTGGGATTGCCACTGAAGGATGGCCTAAGGGGACCTATGATGGTTTAGGAATTCTACTCAGTATACTATTGGTCGTCTTGGTTACTTCTATTAGTGATTACAGGCAGTCTTTGCAATTCAAGGATCTTGACCGGGAAAAGCAAAAAATTGATGTTGATGTCACTAGGGATGGGCTGAGGAAAAAAGTTTCCATTTATGACTTGGTTGTTGGAGATATTGTTCATCTATCCATTGGGAATCAGGTTCCTGCTGATGGGGTTTTCATATCAGGATACAGTCTGCTAATTGATGAATCCAGTTTATCTGGTGAGAGTGAACCAGTGAACATAGGTGTGGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAAGATGGATCTGGAAAGATGTTGGTAACAACAGTTGGCATGAAAACTGAATGGGGAAAACTAATGGAAACTCTCAGCGAGGGAGGAGAAGATGAGACTCCACTGCAGGTGAAGCTGAATGGTGTAGCAACTCTTATTGGTAAAATTGGTTTGACTTTTGCTGTATTGACATTCCTGGTGATGACAGGAAGGTTTCTCGTGGCAAAAGCTGCTCACCATCAATTTACGAAATGGACTTCAAGTGATGCACTAAAACTCTTAGATTTCTTTGCCATTGCAGTTACAATAATAGTTGTCGCAGTTCCTGAAGGTTTACCACTGGCAGTGACGTTGAGCCTTGCCTTTGCTATGAAGAAACTGATGACCGAAAGAGCACTAGTTAGGCACCTGTCTGCATGTGAAACGATGGGTTCGGCCAGTTGCATTTGCACAGATAAGACAGGGACGTTAACCACAAACCACATGATAGTTAGCCGTGCATGGGTTTGTGAACATTTTATGGAGAATAAAGACCATGGGAGTGTAGACAAATTGAAATCGGAGATCTCTGAAAACGTTTTAGGCATACTTTTGCAGTCCATATTTCAAAATACTAGCTGCGAAGTGACTAAAGATAAGGACGGGCAGAACTCGATCGTTGGTGGAACACCAACGGAATCAGCACTATTAGAGTTTGGCATCCATTTGGGTGGGGATTTTCATGCCCAACGTACAGAATATAATATACTTAAGGTTGAGCCTTTCAATTCTGTTAGGAAGAAGATGTCTGTACTTGTAGCACTTCCTAATGGTGGTGGGGTTAGAGCTTTTGTCAAAGGTGCATCTGAAATTATACTAGGAATGTGTGACAAGTATATTGATTCCAATGGAGAATCTATTGATTTAACAGATGAGACGGTAAAGAATGCTACAGACGTTATCAATAGTTTTGCCAATGAAGCTTTGAGGACACTTTGCTTGGCCTTCAAAGATTTAGGGGACCCCAGTGACAAATCTATTCCAGATGATGGATATACATTAATTACAGTTGTTGGAATCAAGGATCCTGTACGCCCAGGGGTCAAGGAAGCTGTTGAAACTTGTTTAAAAGCTGGAATAACTGTGCGTATGGTTACTGGTGACAATATTAATACAGCGAAGGCTATTGCCAAAGAATGTGGTATACTTACACACGGTGGTTTAGCTATAGAAGGACCAGACTTCCGTAATTTATCTACAGAACAGATGAAGCAAGTTATACCAAAACTCCAGGTGATGGCTCGGTCCTTGCCGCTGGACAAATACACATTGGTTAACAATTTGCGGAGTATGTTTGGCGAGGTCGTTGCAGTGACTGGAGATGGGACAAATGATGCTCCAGCTTTGCATGAGTCAGATATTGGACTAGCTATGGGCATTGCCGGGACTGAGGTGGCCAAAGAAAATGCCGATGTCATCATAATGGATGACAATTTTTCAACCATTGTAAATGTTGCGAGATGGGGACGTGCGGTGTATATTAACATACAAAAATTTGTGCAGTTTCAGCTAACAGTTAACATTGTTGCTCTAGTGATCAATTTTGTTTCTGCTTGCCTCTCAGGATCTGCTCCTCTTACGGCTGTTCAGTTGCTTTGGGTGAACTTGATTATGGACACTCTTGGTGCCTTGGCCCTGGCCACAGAGCCTCCAAATGATGCACTCATGCAGAGACCCCCAATTCCCAAGGGGGTTAGCTTTATTACCAAAGCCATGTGGAGGAACATTGTTGGTCAGAGTATCTATCAACTTGCTGTTCTTGCAGTTCTTAATTTTAGGGGAAAGCAACTTCTTGGACTTAGTGGAGCCGATTCCACGAAAGAACTTAATACTTTGATATTTAACTCATTTGTGTTCTGCCAGGTTTTCAACGAAATCAACAGCCGTGAGATAGAAAAGATCAACATATTCCGAGGGATGTTCAGCAGCTGGATATTTTTGGGAGTAATGGCATCCACAATTGGGTTTCAAATAATAATTGTTGAACTTCTGGGTGCTTTTGCAAGCACTGTACCACTAAGCTGGGAACTGTGGGGACTGAGCGTTTTGATTGGATTTGTAAGCATGCCAGTTGCAGTTGTGTTGAAGTTCATCCCTGTTCATAAGGAAACAGTCCATCATGATGGCTACGAACCACTCCCTTCTGGCCCAGAGCTGGCTTGA 3012 42.33 MSIEKYLLKDFEVEPKRPSPEALRRWRSAVSIVKNRRRRFRNTADLDKRSEAEKKKLKIQKAALQFIDDELASIVRSHDYKALKFHGGVEGLSRKVSVALDAGVSEKDVSKRQEIYGYNRYTEKPSRSFLVFLWEALHDVTLIILIFCALISLGVGIATEGWPKGTYDGLGILLSILLVVLVTSISDYRQSLQFKDLDREKQKIDVDVTRDGLRKKVSIYDLVVGDIVHLSIGNQVPADGVFISGYSLLIDESSLSGESEPVNIGVEKPFLLSGTKVQDGSGKMLVTTVGMKTEWGKLMETLSEGGEDETPLQVKLNGVATLIGKIGLTFAVLTFLVMTGRFLVAKAAHHQFTKWTSSDALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMTERALVRHLSACETMGSASCICTDKTGTLTTNHMIVSRAWVCEHFMENKDHGSVDKLKSEISENVLGILLQSIFQNTSCEVTKDKDGQNSIVGGTPTESALLEFGIHLGGDFHAQRTEYNILKVEPFNSVRKKMSVLVALPNGGGVRAFVKGASEIILGMCDKYIDSNGESIDLTDETVKNATDVINSFANEALRTLCLAFKDLGDPSDKSIPDDGYTLITVVGIKDPVRPGVKEAVETCLKAGITVRMVTGDNINTAKAIAKECGILTHGGLAIEGPDFRNLSTEQMKQVIPKLQVMARSLPLDKYTLVNNLRSMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFSTIVNVARWGRAVYINIQKFVQFQLTVNIVALVINFVSACLSGSAPLTAVQLLWVNLIMDTLGALALATEPPNDALMQRPPIPKGVSFITKAMWRNIVGQSIYQLAVLAVLNFRGKQLLGLSGADSTKELNTLIFNSFVFCQVFNEINSREIEKINIFRGMFSSWIFLGVMASTIGFQIIIVELLGAFASTVPLSWELWGLSVLIGFVSMPVAVVLKFIPVHKETVHHDGYEPLPSGPELA 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2792960 2804940 + Cp4.1LG03g08360.1 Cpe03g00476 466193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g00476 1003 SFLD C1.7: P-type atpase like 402 774 - -
Cpe03g00476 1003 SUPERFAMILY Calcium ATPase, transmembrane domain M 86 984 IPR023298 -
Cpe03g00476 1003 ProSitePatterns E1-E2 ATPases phosphorylation site. 422 428 IPR018303 -
Cpe03g00476 1003 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 51 IPR024750 GO:0005516
Cpe03g00476 1003 CDD P-type_ATPase_Ca_PMCA-like 109 855 - -
Cpe03g00476 1003 Pfam Cation transport ATPase (P-type) 476 561 - -
Cpe03g00476 1003 PANTHER CALCIUM-TRANSPORTING ATPASE 5 989 - -
Cpe03g00476 1003 SFLD p-type atpase 402 774 IPR044492 -
Cpe03g00476 1003 PANTHER CATION TRANSPORTING ATPASE 5 989 - -
Cpe03g00476 1003 SMART Cation_ATPase_N_a_2 79 157 IPR004014 -
Cpe03g00476 1003 Pfam Cation transporting ATPase, C-terminus 807 981 IPR006068 -
Cpe03g00476 1003 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 426 631 IPR023299 GO:0000166
Cpe03g00476 1003 SUPERFAMILY Calcium ATPase, transduction domain A 206 301 IPR008250 -
Cpe03g00476 1003 PRINTS P-type cation-transporting ATPase superfamily signature 722 741 - -
Cpe03g00476 1003 PRINTS P-type cation-transporting ATPase superfamily signature 746 758 - -
Cpe03g00476 1003 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Cpe03g00476 1003 PRINTS P-type cation-transporting ATPase superfamily signature 420 434 - -
Cpe03g00476 1003 PRINTS P-type cation-transporting ATPase superfamily signature 641 651 - -
Cpe03g00476 1003 PRINTS P-type cation-transporting ATPase superfamily signature 619 630 - -
Cpe03g00476 1003 PRINTS H+-transporting ATPase (proton pump) signature 754 779 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe03g00476 1003 PRINTS H+-transporting ATPase (proton pump) signature 722 738 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe03g00476 1003 PRINTS H+-transporting ATPase (proton pump) signature 580 598 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe03g00476 1003 Gene3D - 135 981 - -
Cpe03g00476 1003 Gene3D - 417 767 IPR023214 -
Cpe03g00476 1003 Gene3D - 430 626 IPR023299 GO:0000166
Cpe03g00476 1003 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 53 983 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cpe03g00476 1003 Gene3D - 18 68 - -
Cpe03g00476 1003 Gene3D - 103 303 - -
Cpe03g00476 1003 Pfam E1-E2 ATPase 202 398 - -
Cpe03g00476 1003 Pfam Cation transporter/ATPase, N-terminus 86 152 IPR004014 -
Cpe03g00476 1003 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 172 446 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe03g00476 1003 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 688 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe03g00476 1003 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 518 667 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cpe03g00476 1003 SUPERFAMILY HAD-like 419 827 IPR036412 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00220 Cpe-Chr2:1131171 Cpe03g00476 Cpe-Chr3:2792960 0 dispersed
Cpe03g00476 Cpe-Chr3:2792960 Cpe13g00519 Cpe-Chr13:5307701 0 dispersed
Cpe03g00476 Cpe-Chr3:2792960 Cpe06g00200 Cpe-Chr6:1073086 1.93E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g00476 K01537 - csv:101206199 1722.98